RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 COL19A1Q14993 1142 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 EXOC3L4Q17RC7 722 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 CTC1Q2NKJ3 1217 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 FKBP15Q5T1M5 1219 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 LUZP1Q86V48 1076 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 TTC39CQ8N584 583 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 KREMEN2Q8NCW0 462 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 ZNF461Q8TAF7 563 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 HDAC7Q8WUI4 952 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 TATDN2Q93075 761 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 SYT15Q9BQS2 421 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 CRACR2AQ9BSW2 395 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 ZCWPW1Q9H0M4 648 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 HSD3B7Q9H2F3 369 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 PLEKHA4Q9H4M7 779 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 MAN1C1Q9NR34 630 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 CDH9Q9ULB4 789 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 MAFFQ9ULX9 164 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 WDR27A2RRH5 827 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 ABLIM3O94929 683 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 PDGFRBP09619 1106 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 WEE2P0C1S8 567 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 OR4Q2P0C623 313 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 SPATA31D3P0C874 917 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 ACAT1P24752 427 aaKnown RBP20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 GPR17Q13304 367 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 CUL2Q13617 745 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 KCNC3Q14003 757 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 SLC39A12Q504Y0 691 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 INTS6LQ5JSJ4 861 aaKnown RBP20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 LIN9Q5TKA1 542 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 LILRA6Q6PI73 481 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 TMEM184AQ6ZMB5 413 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 SPATA31D4Q6ZUB0 917 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 VN1R2Q8NFZ6 395 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 LMO3Q8TAP4 145 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 HLA-CQ95604 372 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 TMEM209Q96SK2 561 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 SDCBP2Q9H190 292 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 FAM124BQ9H5Z6 455 aaPredicted RBP20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 UBE2ZQ9H832 354 aaPredicted RBP20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 AFF4Q9UHB7 1163 aaKnown RBP20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 FBXW11Q9UKB1 542 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 COG5Q9UP83 839 aa20.41■□□□□ 0.86
SQSTM1-216ENST00000626660 GLP2RO95838 553 aa20.4■□□□□ 0.86
SQSTM1-216ENST00000626660 ATP1A3P13637 1013 aa20.4■□□□□ 0.86
SQSTM1-216ENST00000626660 LMO2P25791 158 aa20.4■□□□□ 0.86
SQSTM1-216ENST00000626660 RBM10P98175 930 aaKnown RBP20.4■□□□□ 0.86
SQSTM1-216ENST00000626660 MAPRE1Q15691 268 aaKnown RBP20.4■□□□□ 0.86
SQSTM1-216ENST00000626660 NFE2Q16621 373 aaPredicted RBP20.4■□□□□ 0.86
SQSTM1-216ENST00000626660 RNF19BQ6ZMZ0 732 aa20.4■□□□□ 0.86
SQSTM1-216ENST00000626660 CCDC149Q6ZUS6 474 aa20.4■□□□□ 0.86
SQSTM1-216ENST00000626660 UNC93AQ86WB7 457 aa20.4■□□□□ 0.86
SQSTM1-216ENST00000626660 PPM1KQ8N3J5 372 aa20.4■□□□□ 0.86
SQSTM1-216ENST00000626660 TNIP3Q96KP6 325 aa20.4■□□□□ 0.86
SQSTM1-216ENST00000626660 ANP32EQ9BTT0 268 aa20.4■□□□□ 0.86
SQSTM1-216ENST00000626660 BARX2Q9UMQ3 279 aaPredicted RBP20.4■□□□□ 0.86
SQSTM1-216ENST00000626660 LRRC10BA6NIK2 292 aa20.39■□□□□ 0.85
SQSTM1-216ENST00000626660 PRRG1O14668 218 aa20.39■□□□□ 0.85
SQSTM1-216ENST00000626660 ATF2P15336 505 aa20.39■□□□□ 0.85
SQSTM1-216ENST00000626660 HOXB8P17481 243 aaPredicted RBP20.39■□□□□ 0.85
SQSTM1-216ENST00000626660 CD58P19256 250 aa20.39■□□□□ 0.85
SQSTM1-216ENST00000626660 NDST1P52848 882 aa20.39■□□□□ 0.85
SQSTM1-216ENST00000626660 ADCY1Q08828 1119 aa20.39■□□□□ 0.85
SQSTM1-216ENST00000626660 INCA1Q0VD86 236 aa20.39■□□□□ 0.85
SQSTM1-216ENST00000626660 FILIP1LQ4L180 1135 aa20.39■□□□□ 0.85
SQSTM1-216ENST00000626660 ANKRD54Q6NXT1 300 aa20.39■□□□□ 0.85
SQSTM1-216ENST00000626660 TRIM65Q6PJ69 517 aa20.39■□□□□ 0.85
SQSTM1-216ENST00000626660 C2orf15Q8WU43 125 aaKnown RBP20.39■□□□□ 0.85
SQSTM1-216ENST00000626660 FAM81BQ96LP2 452 aa20.39■□□□□ 0.85
SQSTM1-216ENST00000626660 LGALS16A8MUM7 142 aa20.38■□□□□ 0.85
SQSTM1-216ENST00000626660 HCRTO43612 131 aa20.38■□□□□ 0.85
SQSTM1-216ENST00000626660 TBX10O75333 385 aa20.38■□□□□ 0.85
SQSTM1-216ENST00000626660 SLC9A1P19634 815 aa20.38■□□□□ 0.85
SQSTM1-216ENST00000626660 PSMC1P62191 440 aaKnown RBP20.38■□□□□ 0.85
SQSTM1-216ENST00000626660 GCNT1Q02742 428 aa20.38■□□□□ 0.85
SQSTM1-216ENST00000626660 UVSSAQ2YD98 709 aa20.38■□□□□ 0.85
SQSTM1-216ENST00000626660 RTL10Q7L3V2 364 aa20.38■□□□□ 0.85
SQSTM1-216ENST00000626660 PGLYRP2Q96PD5 576 aa20.38■□□□□ 0.85
SQSTM1-216ENST00000626660 ARID3AQ99856 593 aa20.38■□□□□ 0.85
SQSTM1-216ENST00000626660 NT5C1AQ9BXI3 368 aa20.38■□□□□ 0.85
SQSTM1-216ENST00000626660 SFXN1Q9H9B4 322 aa20.38■□□□□ 0.85
SQSTM1-216ENST00000626660 CYP4F11Q9HBI6 524 aa20.38■□□□□ 0.85
SQSTM1-216ENST00000626660 CISHQ9NSE2 258 aa20.38■□□□□ 0.85
SQSTM1-216ENST00000626660 GTF3C4Q9UKN8 822 aa20.38■□□□□ 0.85
SQSTM1-216ENST00000626660 PCDHB5Q9Y5E4 795 aa20.38■□□□□ 0.85
SQSTM1-216ENST00000626660 EYSQ5T1H1 3165 aa20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 MTMR11A4FU01 709 aa20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 CILPO75339 1184 aa20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 SERPINC1P01008 464 aa20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 C8AP07357 584 aa20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 PTPN1P18031 435 aaKnown RBP20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 KCNA5P22460 613 aa20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 PON1P27169 355 aa20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 LTBRP36941 435 aa20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 TJAP1Q5JTD0 557 aa20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 PPM1LQ5SGD2 360 aa20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 C4orf50Q6ZRC1 276 aa20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 RRAGAQ7L523 313 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms