RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 RBBP7Q16576 425 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 TAF2Q6P1X5 1199 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 ZBTB49Q6ZSB9 765 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 PARD3BQ8TEW8 1205 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 VPS50Q96JG6 964 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 TMEM237Q96Q45 408 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 SEMA4AQ9H3S1 761 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 DCP1AQ9NPI6 582 aaPredicted RBP9.29□□□□□ -0.92
VCL-206ENST00000623461 SEC31BQ9NQW1 1179 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 GLI2P10070 1586 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 STIP1P31948 543 aaKnown RBP9.29□□□□□ -0.92
VCL-206ENST00000623461 FOXO4P98177 505 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 OTUD4Q01804 1114 aaKnown RBP9.29□□□□□ -0.92
VCL-206ENST00000623461 CCNJLQ8IV13 435 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 P3H2Q8IVL5 708 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 ZFYVE19Q96K21 471 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 PPP1R36Q96LQ0 422 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 ADAM33Q9BZ11 813 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 PCDHB2Q9Y5E7 798 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 PRR23D1E9PI22 279 aaPredicted RBP9.29□□□□□ -0.92
VCL-206ENST00000623461 KLHL41O60662 606 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 POLBP06746 335 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 PRR23D2P0DMB1 279 aaPredicted RBP9.29□□□□□ -0.92
VCL-206ENST00000623461 RALAP11233 206 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 RPS6P62753 249 aaKnown RBP9.29□□□□□ -0.92
VCL-206ENST00000623461 TNFAIP1Q13829 316 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 EPHA7Q15375 998 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 RGS21Q2M5E4 152 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 NCAPG2Q86XI2 1143 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 FBXL16Q8N461 479 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 PPHLN1Q8NEY8 458 aaKnown RBP9.29□□□□□ -0.92
VCL-206ENST00000623461 SLC30A5Q8TAD4 765 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 PPP1R2P1Q96PQ5 205 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 THAP2Q9H0W7 228 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 TIMMDC1Q9NPL8 285 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 DKK3Q9UBP4 350 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 SORCS3Q9UPU3 1222 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 SH3GLB1Q9Y371 365 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 SNX13Q9Y5W8 968 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 CLTCL1P53675 1640 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 ALADP13716 330 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 PDPK2PQ6A1A2 396 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 ARMCX6Q7L4S7 300 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 ZCCHC7Q8N3Z6 543 aaKnown RBP9.28□□□□□ -0.92
VCL-206ENST00000623461 ULK4Q96C45 1275 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 PGBD4Q96DM1 585 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 TLR10Q9BXR5 811 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 TRPC7Q9HCX4 862 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 CCNL1Q9UK58 526 aaPredicted RBP9.28□□□□□ -0.92
VCL-206ENST00000623461 STAP1Q9ULZ2 295 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 M0QYV0 167 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 WBP4O75554 376 aaKnown RBP9.28□□□□□ -0.92
VCL-206ENST00000623461 CIITAP33076 1130 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 NCKAP1LP55160 1127 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 ZNF394Q53GI3 561 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 CLVS1Q8IUQ0 354 aaPredicted RBP9.28□□□□□ -0.92
VCL-206ENST00000623461 NUP93Q8N1F7 819 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 DAGLBQ8NCG7 672 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 DLG3Q92796 817 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 LRRC39Q96DD0 335 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 GOLPH3Q9H4A6 298 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 ZNF556Q9HAH1 456 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 BTG4Q9NY30 223 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 PI4KBQ9UBF8 816 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 FCHO1O14526 889 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 S100A1P23297 94 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 PON1P27169 355 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 QARSP47897 775 aaKnown RBP9.28□□□□□ -0.92
VCL-206ENST00000623461 ATXN3P54252 364 aaPredicted RBP9.28□□□□□ -0.92
VCL-206ENST00000623461 KCNK10P57789 538 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 CNGA2Q16280 664 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 CCNG2Q16589 344 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 FAM102AQ5T9C2 384 aaPredicted RBP9.28□□□□□ -0.92
VCL-206ENST00000623461 PDXDC2PQ6P474 469 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 ANGPTL8Q6UXH0 198 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 R3HDM2Q9Y2K5 976 aaKnown RBP9.28□□□□□ -0.92
VCL-206ENST00000623461 C1orf232A0A0U1RR37 186 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 DNALI1O14645 258 aaPredicted RBP9.28□□□□□ -0.92
VCL-206ENST00000623461 NR1H2P55055 460 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 TMEM63BQ5T3F8 832 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 RSBN1Q5VWQ0 802 aaPredicted RBP9.28□□□□□ -0.92
VCL-206ENST00000623461 NDNQ99608 321 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 LRMDAQ9H2I8 198 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 PIK3CDO00329 1044 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 GJA8P48165 433 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 MTTPP55157 894 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 NFX1Q12986 1120 aaKnown RBP9.28□□□□□ -0.92
VCL-206ENST00000623461 USP10Q14694 798 aaKnown RBP9.28□□□□□ -0.92
VCL-206ENST00000623461 FEZF2Q8TBJ5 459 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 SCFD1Q8WVM8 642 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 EZH1Q92800 747 aaPredicted RBP9.28□□□□□ -0.92
VCL-206ENST00000623461 HSPBP1Q9NZL4 362 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 ARIH1Q9Y4X5 557 aaPredicted RBP9.28□□□□□ -0.92
VCL-206ENST00000623461 DGKIO75912 1065 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 CCNHP51946 323 aaPredicted RBP9.28□□□□□ -0.92
VCL-206ENST00000623461 EFHC2Q5JST6 749 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 CPA5Q8WXQ8 436 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 RBBP8Q99708 897 aa9.28□□□□□ -0.92
VCL-206ENST00000623461 NMT2O60551 498 aa9.27□□□□□ -0.92
VCL-206ENST00000623461 RAG1P15918 1043 aa9.27□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms