RNA–Protein interactions for RNA: ENST00000622098.4

CDK16-223, Transcript of cyclin dependent kinase 16, human

TSL 2 BASIC

Gene CDK16, Length 2,968 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK16-223	ENST00000622098	C15orf41	Q9Y2V0	281 aa		18.7	■□□□□ 0.58
CDK16-223	ENST00000622098	SPATA31C2	B4DYI2	1134 aa		18.7	■□□□□ 0.58
CDK16-223	ENST00000622098	PIGR	P01833	764 aa		18.7	■□□□□ 0.58
CDK16-223	ENST00000622098	CALB1	P05937	261 aa		18.7	■□□□□ 0.58
CDK16-223	ENST00000622098	CLNS1A	P54105	237 aa	Known RBP	18.7	■□□□□ 0.58
CDK16-223	ENST00000622098	BACE1	P56817	501 aa		18.7	■□□□□ 0.58
CDK16-223	ENST00000622098	SETDB1	Q15047	1291 aa		18.7	■□□□□ 0.58
CDK16-223	ENST00000622098	CYP4A22	Q5TCH4	519 aa		18.7	■□□□□ 0.58
CDK16-223	ENST00000622098	CENPU	Q71F23	418 aa		18.7	■□□□□ 0.58
CDK16-223	ENST00000622098	VSIG1	Q86XK7	387 aa		18.7	■□□□□ 0.58
CDK16-223	ENST00000622098	REPS2	Q8NFH8	660 aa		18.7	■□□□□ 0.58
CDK16-223	ENST00000622098	DHX33	Q9H6R0	707 aa	Known RBP	18.7	■□□□□ 0.58
CDK16-223	ENST00000622098	ZNF302	Q9NR11	478 aa		18.7	■□□□□ 0.58
CDK16-223	ENST00000622098	CYP39A1	Q9NYL5	469 aa		18.7	■□□□□ 0.58
CDK16-223	ENST00000622098	NOP53	Q9NZM5	478 aa	Known RBP	18.7	■□□□□ 0.58
CDK16-223	ENST00000622098	ZNF214	Q9UL59	606 aa	Predicted RBP	18.7	■□□□□ 0.58
CDK16-223	ENST00000622098		A0A1W2PPM1	405 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	MAGEB2	O15479	319 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	OAT	P04181	439 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	CCND1	P24385	295 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	TNFSF9	P41273	254 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	SKIV2L2	P42285	1042 aa	Known RBP	18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	DYNLT1	P63172	113 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	LACTB	P83111	547 aa	Predicted RBP	18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	TNFAIP1	Q13829	316 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	KIRREL3	Q8IZU9	778 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	RSRC1	Q96IZ7	334 aa	Known RBP	18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	SMG5	Q9UPR3	1016 aa	Known RBP	18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	DRG1	Q9Y295	367 aa	Known RBP	18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	TTLL13P	A6NNM8	815 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	ALOX15B	O15296	676 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	PIAS1	O75925	651 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	CDKN2B	P42772	138 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	SLC1A5	Q15758	541 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	LRRC38	Q5VT99	294 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	LRRC37B	Q96QE4	947 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	C10orf88	Q9H8K7	445 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	CHKB	Q9Y259	395 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	ADGRA2	Q96PE1	1338 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	ATP2A1	O14983	1001 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	HMGCS2	P54868	508 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	ATP11A	P98196	1134 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	TMEM132B	Q14DG7	1078 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	PDK4	Q16654	411 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	GPAT2	Q6NUI2	795 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	ERICH1	Q86X53	443 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	LRRC8C	Q8TDW0	803 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	MTMR12	Q9C0I1	747 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	TXLNG	Q9NUQ3	528 aa		18.69	■□□□□ 0.58
CDK16-223	ENST00000622098	TCRBV5S1A1T	A0A578	114 aa		18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	TARS	P26639	723 aa	Known RBP	18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	ARL2	P36404	184 aa		18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	TGFB2	P61812	414 aa		18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	GAD2	Q05329	585 aa		18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	MOGS	Q13724	837 aa		18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	SMTNL2	Q2TAL5	461 aa		18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	ZBTB33	Q86T24	672 aa		18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	TAB3	Q8N5C8	712 aa	Predicted RBP	18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	TMEM35B	Q8NCS4	154 aa		18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	TMEM237	Q96Q45	408 aa		18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	SENP1	Q9P0U3	644 aa		18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	SHOC2	Q9UQ13	582 aa		18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	MAFB	Q9Y5Q3	323 aa	Predicted RBP	18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	USH1C	Q9Y6N9	552 aa		18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	DIAPH2	O60879	1101 aa		18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	ASS1	P00966	412 aa	Known RBP	18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	ITGAV	P06756	1048 aa		18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	YARS	P54577	528 aa	Known RBP	18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	MYL6	P60660	151 aa		18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	MTM1	Q13496	603 aa		18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	CCDC142	Q17RM4	750 aa		18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	NKD2	Q969F2	451 aa	Predicted RBP	18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	UTP4	Q969X6	686 aa	Known RBP	18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	TCHP	Q9BT92	498 aa		18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	MAK16	Q9BXY0	300 aa	Known RBP	18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	PCDH9	Q9HC56	1237 aa		18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	CISH	Q9NSE2	258 aa		18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	18.68	■□□□□ 0.58
CDK16-223	ENST00000622098	COL11A1	P12107	1806 aa	Predicted RBP	18.67	■□□□□ 0.58
CDK16-223	ENST00000622098	KRT4	P19013	534 aa		18.67	■□□□□ 0.58
CDK16-223	ENST00000622098	PIGH	Q14442	188 aa	Predicted RBP	18.67	■□□□□ 0.58
CDK16-223	ENST00000622098	HIF1A	Q16665	826 aa		18.67	■□□□□ 0.58
CDK16-223	ENST00000622098	NBPF12	Q5TAG4	269 aa	Predicted RBP	18.67	■□□□□ 0.58
CDK16-223	ENST00000622098	HHAT	Q5VTY9	493 aa		18.67	■□□□□ 0.58
CDK16-223	ENST00000622098	CIAPIN1	Q6FI81	312 aa		18.67	■□□□□ 0.58
CDK16-223	ENST00000622098	UBR7	Q8N806	425 aa		18.67	■□□□□ 0.58
CDK16-223	ENST00000622098	FZD1	Q9UP38	647 aa		18.67	■□□□□ 0.58
CDK16-223	ENST00000622098	AGTPBP1	Q9UPW5	1226 aa		18.67	■□□□□ 0.58
CDK16-223	ENST00000622098	EDF1	O60869	148 aa	Known RBP	18.67	■□□□□ 0.58
CDK16-223	ENST00000622098	WEE2	P0C1S8	567 aa		18.67	■□□□□ 0.58
CDK16-223	ENST00000622098	DPEP1	P16444	411 aa		18.67	■□□□□ 0.58
CDK16-223	ENST00000622098	GPX6	P59796	221 aa		18.67	■□□□□ 0.58
CDK16-223	ENST00000622098	EFTUD2	Q15029	972 aa	Known RBP eCLIP	18.67	■□□□□ 0.58	1e-6	■■■■□ 19.9
CDK16-223	ENST00000622098	KCNT1	Q5JUK3	1230 aa		18.67	■□□□□ 0.58
CDK16-223	ENST00000622098	SCARA5	Q6ZMJ2	495 aa		18.67	■□□□□ 0.58
CDK16-223	ENST00000622098	WDTC1	Q8N5D0	677 aa		18.67	■□□□□ 0.58
CDK16-223	ENST00000622098	PDGFD	Q9GZP0	370 aa	Predicted RBP	18.67	■□□□□ 0.58
CDK16-223	ENST00000622098	ZWILCH	Q9H900	591 aa		18.67	■□□□□ 0.58
CDK16-223	ENST00000622098	HAO1	Q9UJM8	370 aa		18.67	■□□□□ 0.58
CDK16-223	ENST00000622098	TYROBP	O43914	113 aa		18.66	■□□□□ 0.58

Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms