RNA–Protein interactions for RNA: ENST00000621990.4

PDPN-212, Transcript of podoplanin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PDPN, Length 2,738 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-212ENST00000621990 TNFSF13BQ9Y275 285 aa9.96□□□□□ -0.81
PDPN-212ENST00000621990 TMEM120BA0PK00 339 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 PI4K2BG5E9Z4 385 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 DNM1LO00429 736 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 NOP56O00567 594 aaKnown RBP9.96□□□□□ -0.82
PDPN-212ENST00000621990 TNNC2P02585 160 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 WEE2P0C1S8 567 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 VCPP55072 806 aaKnown RBP9.96□□□□□ -0.82
PDPN-212ENST00000621990 TFAMQ00059 246 aaKnown RBP9.96□□□□□ -0.82
PDPN-212ENST00000621990 SLC25A11Q02978 314 aaKnown RBP9.96□□□□□ -0.82
PDPN-212ENST00000621990 MOGSQ13724 837 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 FAM187BQ17R55 369 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 SPRED3Q2MJR0 410 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 CCDC38Q502W7 563 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 TXNRD3NBQ6F5E7 133 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 DCUN1D2Q6PH85 259 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 GADL1Q6ZQY3 521 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 EEPD1Q7L9B9 569 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 ERICH1Q86X53 443 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 ERO1BQ86YB8 467 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 RIBC1Q8N443 379 aaPredicted RBP9.96□□□□□ -0.82
PDPN-212ENST00000621990 FRMD8P1Q9BZ68 369 aaPredicted RBP9.96□□□□□ -0.82
PDPN-212ENST00000621990 FHDC1Q9C0D6 1143 aaPredicted RBP9.96□□□□□ -0.82
PDPN-212ENST00000621990 TXNRD2Q9NNW7 524 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 KLHL11Q9NVR0 708 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 CTNNAL1Q9UBT7 734 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 SIX4Q9UIU6 781 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 CEP83Q9Y592 693 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 MCM3APO60318 1980 aa9.96□□□□□ -0.82
PDPN-212ENST00000621990 SPDYE5A6NIY4 337 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 SIGLEC16A6NMB1 481 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 NDC80O14777 642 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 RASSF9O75901 435 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 PGK2P07205 417 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 CETPP11597 493 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 NF2P35240 595 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 SSR1P43307 286 aaKnown RBP9.95□□□□□ -0.82
PDPN-212ENST00000621990 VPS41P49754 854 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 MORF4L2Q15014 288 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 WDR72Q3MJ13 1102 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 PTPN20Q4JDL3 420 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 TMEM63BQ5T3F8 832 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 FBXW10Q5XX13 1052 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 DENND1BQ6P3S1 775 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 DLK2Q6UY11 383 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 CCDC125Q86Z20 511 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 RHPN2Q8IUC4 686 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 ANKS4BQ8N8V4 417 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 GLIS1Q8NBF1 620 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 NLGN2Q8NFZ4 835 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 SLC35B2Q8TB61 432 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 ANKRD36BP1Q96IX9 119 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 SPATA33Q96N06 139 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 RBM15Q96T37 977 aaKnown RBP eCLIP9.95□□□□□ -0.82
PDPN-212ENST00000621990 PHACTR1Q9C0D0 580 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 CDT1Q9H211 546 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 SMARCAD1Q9H4L7 1026 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 VRTNQ9H8Y1 702 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 ADARB2Q9NS39 739 aaKnown RBP9.95□□□□□ -0.82
PDPN-212ENST00000621990 RBPJLQ9UBG7 517 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 CYTH4Q9UIA0 394 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 CCT8L1PA6NM43 557 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 B4GALT5O43286 388 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 MED7O43513 233 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 HBP1O60381 514 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 HNRNPH1P31943 449 aaKnown RBP9.95□□□□□ -0.82
PDPN-212ENST00000621990 GJC1P36383 396 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 MAGEA4P43358 317 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 IREB2P48200 963 aaKnown RBP9.95□□□□□ -0.82
PDPN-212ENST00000621990 ZNF394Q53GI3 561 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 GSTA5Q7RTV2 222 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 TDRPQ86YL5 185 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 IFNLR1Q8IU57 520 aaPredicted RBP9.95□□□□□ -0.82
PDPN-212ENST00000621990 CYP4X1Q8N118 509 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 ARFGAP1Q8N6T3 406 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 TTC25Q96NG3 672 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 PCDH9Q9HC56 1237 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 TPX2Q9ULW0 747 aaKnown RBP9.95□□□□□ -0.82
PDPN-212ENST00000621990 SHOC2Q9UQ13 582 aa9.95□□□□□ -0.82
PDPN-212ENST00000621990 GOLGA6L7A0A1B0GV03 622 aa9.94□□□□□ -0.82
PDPN-212ENST00000621990 C22orf31O95567 290 aa9.94□□□□□ -0.82
PDPN-212ENST00000621990 IQCF3P0C7M6 154 aa9.94□□□□□ -0.82
PDPN-212ENST00000621990 CREB1P16220 341 aa9.94□□□□□ -0.82
PDPN-212ENST00000621990 ATF7P17544 494 aaPredicted RBP9.94□□□□□ -0.82
PDPN-212ENST00000621990 POLR2BP30876 1174 aaKnown RBP9.94□□□□□ -0.82
PDPN-212ENST00000621990 SCTRP47872 440 aa9.94□□□□□ -0.82
PDPN-212ENST00000621990 RAD23BP54727 409 aa9.94□□□□□ -0.82
PDPN-212ENST00000621990 MPP2Q14168 576 aa9.94□□□□□ -0.82
PDPN-212ENST00000621990 RASA2Q15283 850 aa9.94□□□□□ -0.82
PDPN-212ENST00000621990 RNASEH2BQ5TBB1 312 aaKnown RBP9.94□□□□□ -0.82
PDPN-212ENST00000621990 EEF1DP3Q658K8 133 aa9.94□□□□□ -0.82
PDPN-212ENST00000621990 PRUNE1Q86TP1 453 aa9.94□□□□□ -0.82
PDPN-212ENST00000621990 DHX37Q8IY37 1157 aaKnown RBP9.94□□□□□ -0.82
PDPN-212ENST00000621990 LINC01465Q8N7H1 131 aa9.94□□□□□ -0.82
PDPN-212ENST00000621990 CKAP2Q8WWK9 683 aa9.94□□□□□ -0.82
PDPN-212ENST00000621990 MAML1Q92585 1016 aa9.94□□□□□ -0.82
PDPN-212ENST00000621990 OTUD5Q96G74 571 aa9.94□□□□□ -0.82
PDPN-212ENST00000621990 CCDC77Q9BR77 488 aa9.94□□□□□ -0.82
PDPN-212ENST00000621990 NSRP1Q9H0G5 558 aaKnown RBP9.94□□□□□ -0.82
PDPN-212ENST00000621990 FAM124BQ9H5Z6 455 aaPredicted RBP9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms