RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 NDST1P52848 882 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 OGDHQ02218 1023 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 ZBTB6Q15916 424 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 DCUN1D2Q6PH85 259 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 JAMLQ86YT9 394 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 RHOT1Q8IXI2 618 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 EIF1ADQ8N9N8 165 aaKnown RBP18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 SEC14L1Q92503 715 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 HEXIM2Q96MH2 286 aaKnown RBP18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 HERPUD2Q9BSE4 406 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 MED4Q9NPJ6 270 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 BARX2Q9UMQ3 279 aaPredicted RBP18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 FAN1Q9Y2M0 1017 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 SCN1AP35498 2009 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 FSCN2O14926 492 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 PSTPIP1O43586 416 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 PTGIRP43119 386 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 CRYBB1P53674 252 aaPredicted RBP18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 INCA1Q0VD86 236 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 MYO1EQ12965 1108 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 TRIM32Q13049 653 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 DHX34Q14147 1143 aaKnown RBP18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 PPP1R15BQ5SWA1 713 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 MFSD14CQ5VZR4 134 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 CYP4F22Q6NT55 531 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 ALKAL1Q6UXT8 129 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 DPH6Q7L8W6 267 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 C3orf20Q8ND61 904 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 FAM71BQ8TC56 605 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 KLK14Q9P0G3 267 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 CNTN3Q9P232 1028 aa18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.37■□□□□ 0.53
PCDHGC3-205ENST00000617641 FAM187AA6NFU0 413 aa18.36■□□□□ 0.53
PCDHGC3-205ENST00000617641 GOLGA8SH3BPF8 625 aa18.36■□□□□ 0.53
PCDHGC3-205ENST00000617641 TCF4P15884 667 aa18.36■□□□□ 0.53
PCDHGC3-205ENST00000617641 MAN1A1P33908 653 aa18.36■□□□□ 0.53
PCDHGC3-205ENST00000617641 GJA9P57773 515 aa18.36■□□□□ 0.53
PCDHGC3-205ENST00000617641 CYP1B1Q16678 543 aa18.36■□□□□ 0.53
PCDHGC3-205ENST00000617641 UBXN11Q5T124 520 aa18.36■□□□□ 0.53
PCDHGC3-205ENST00000617641 CCDC137Q6PK04 289 aaKnown RBP18.36■□□□□ 0.53
PCDHGC3-205ENST00000617641 CXCL17Q6UXB2 119 aa18.36■□□□□ 0.53
PCDHGC3-205ENST00000617641 BEST2Q8NFU1 509 aa18.36■□□□□ 0.53
PCDHGC3-205ENST00000617641 CPXM1Q96SM3 734 aa18.36■□□□□ 0.53
PCDHGC3-205ENST00000617641 RAB17Q9H0T7 212 aa18.36■□□□□ 0.53
PCDHGC3-205ENST00000617641 RNF39Q9H2S5 420 aa18.36■□□□□ 0.53
PCDHGC3-205ENST00000617641 VPS18Q9P253 973 aa18.36■□□□□ 0.53
PCDHGC3-205ENST00000617641 PCYOX1Q9UHG3 505 aa18.36■□□□□ 0.53
PCDHGC3-205ENST00000617641 M0QYV0 167 aa18.35■□□□□ 0.53
PCDHGC3-205ENST00000617641 TERF2Q15554 542 aa18.35■□□□□ 0.53
PCDHGC3-205ENST00000617641 CCDC50Q8IVM0 306 aa18.35■□□□□ 0.53
PCDHGC3-205ENST00000617641 NME8Q8N427 588 aa18.35■□□□□ 0.53
PCDHGC3-205ENST00000617641 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.35■□□□□ 0.534e-7■■■■■ 58.1
PCDHGC3-205ENST00000617641 ERP44Q9BS26 406 aa18.35■□□□□ 0.53
PCDHGC3-205ENST00000617641 MTG1Q9BT17 334 aaPredicted RBP18.35■□□□□ 0.53
PCDHGC3-205ENST00000617641 SNX9Q9Y5X1 595 aa18.35■□□□□ 0.53
PCDHGC3-205ENST00000617641 F8VP50 259 aa18.35■□□□□ 0.53
PCDHGC3-205ENST00000617641 VDRP11473 427 aa18.35■□□□□ 0.53
PCDHGC3-205ENST00000617641 COILP38432 576 aaPredicted RBP18.35■□□□□ 0.53
PCDHGC3-205ENST00000617641 KCNJ1P48048 391 aa18.35■□□□□ 0.53
PCDHGC3-205ENST00000617641 PRKCZQ05513 592 aa18.35■□□□□ 0.53
PCDHGC3-205ENST00000617641 DUPD1Q68J44 220 aa18.35■□□□□ 0.53
PCDHGC3-205ENST00000617641 MREGQ8N565 214 aa18.35■□□□□ 0.53
PCDHGC3-205ENST00000617641 C1orf54Q8WWF1 131 aa18.35■□□□□ 0.53
PCDHGC3-205ENST00000617641 FAM114A2Q9NRY5 505 aa18.35■□□□□ 0.53
PCDHGC3-205ENST00000617641 KLHL11Q9NVR0 708 aa18.35■□□□□ 0.53
PCDHGC3-205ENST00000617641 PARP2Q9UGN5 583 aa18.35■□□□□ 0.53
PCDHGC3-205ENST00000617641 STRIP2Q9ULQ0 834 aa18.35■□□□□ 0.53
PCDHGC3-205ENST00000617641 ERBB2P04626 1255 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 CYP3A5P20815 502 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 CAP1Q01518 475 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 NBPF20Q3BBV1 942 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 SGO2Q562F6 1265 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 KATNAL2Q8IYT4 538 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 UBA3Q8TBC4 463 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 MRPL45Q9BRJ2 306 aaKnown RBP18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 HEMGNQ9BXL5 484 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 DCAF8L1A6NGE4 600 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 KPNA6O60684 536 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 HSF2BPO75031 334 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 RNF40O75150 1001 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 FLT3P36888 993 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 PSMC1P62191 440 aaKnown RBP18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 TAP1Q03518 808 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 CNGA2Q16280 664 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 ATP13A4Q4VNC1 1196 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 C9orf57Q5W0N0 161 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 CCDC105Q8IYK2 499 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 C12orf50Q8NA57 414 aaPredicted RBP18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 NT5C1AQ9BXI3 368 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 SYNCQ9H7C4 482 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 RASAL2Q9UJF2 1139 aa18.34■□□□□ 0.53
PCDHGC3-205ENST00000617641 SMIM28A0A1B0GU29 152 aa18.33■□□□□ 0.53
PCDHGC3-205ENST00000617641 TMEM88BA6NKF7 163 aa18.33■□□□□ 0.53
PCDHGC3-205ENST00000617641 RALAP11233 206 aa18.33■□□□□ 0.53
PCDHGC3-205ENST00000617641 RFC1P35251 1148 aaPredicted RBP18.33■□□□□ 0.53
PCDHGC3-205ENST00000617641 ALS2CLQ60I27 953 aa18.33■□□□□ 0.53
PCDHGC3-205ENST00000617641 FAM228AQ86W67 206 aa18.33■□□□□ 0.53
PCDHGC3-205ENST00000617641 XYLT1Q86Y38 959 aa18.33■□□□□ 0.53
PCDHGC3-205ENST00000617641 C12orf29Q8N999 325 aa18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms