RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 ZYXQ15942 572 aaKnown RBP10.74□□□□□ -0.69
VPS39-214ENST00000614932 TRIM71Q2Q1W2 868 aaKnown RBP10.74□□□□□ -0.69
VPS39-214ENST00000614932 ASTE1Q2TB18 679 aaPredicted RBP10.74□□□□□ -0.69
VPS39-214ENST00000614932 GLIS3Q8NEA6 775 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 BIRC8Q96P09 236 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 ERP44Q9BS26 406 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 SENP6Q9GZR1 1112 aaPredicted RBP10.74□□□□□ -0.69
VPS39-214ENST00000614932 RRN3Q9NYV6 651 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 CLEC11AQ9Y240 323 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 ANKRD31Q8N7Z5 1873 aa10.74□□□□□ -0.69
VPS39-214ENST00000614932 BAIAP3O94812 1187 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 HAUS5O94927 633 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 S100BP04271 92 aaPredicted RBP10.73□□□□□ -0.69
VPS39-214ENST00000614932 CREB1P16220 341 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 HMOX2P30519 316 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 NOP14P78316 857 aaKnown RBP10.73□□□□□ -0.69
VPS39-214ENST00000614932 KLRC3Q07444 240 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 PDAP1Q13442 181 aaKnown RBP10.73□□□□□ -0.69
VPS39-214ENST00000614932 PDE1CQ14123 709 aaPredicted RBP10.73□□□□□ -0.69
VPS39-214ENST00000614932 CRY1Q16526 586 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 SLC45A4Q5BKX6 768 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 KCNK18Q7Z418 384 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 ALLCQ8N6M5 410 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 PPP4R1Q8TF05 950 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 MED30Q96HR3 178 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 CDK5RAP3Q96JB5 506 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 TRIM51Q9BSJ1 452 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 UNKQ9C0B0 810 aaKnown RBP10.73□□□□□ -0.69
VPS39-214ENST00000614932 SEMA4AQ9H3S1 761 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 PLK2Q9NYY3 685 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 GTF3C4Q9UKN8 822 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 SSU72P8A0A1W2PR75 194 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 GOLGA8CPA6NN73 597 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 RBAK-RBAKDNI3L0D1 243 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 HSPA1AP0DMV8 641 aaKnown RBP10.73□□□□□ -0.69
VPS39-214ENST00000614932 HSPA1BP0DMV9 641 aaKnown RBP10.73□□□□□ -0.69
VPS39-214ENST00000614932 ITGA4P13612 1032 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 TCEA1P23193 301 aaKnown RBP10.73□□□□□ -0.69
VPS39-214ENST00000614932 KLRC1P26715 233 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 RCVRNP35243 200 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 STT3AP46977 705 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 KCTD19Q17RG1 926 aaPredicted RBP10.73□□□□□ -0.69
VPS39-214ENST00000614932 ANKRD20A4Q4UJ75 823 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 ASPRV1Q53RT3 343 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 BOLA3Q53S33 107 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 TTC23LQ6PF05 361 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 ZNF410Q86VK4 478 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 SUN5Q8TC36 379 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 PRMT6Q96LA8 375 aaPredicted RBP10.73□□□□□ -0.69
VPS39-214ENST00000614932 MRPS26Q9BYN8 205 aaKnown RBP10.73□□□□□ -0.69
VPS39-214ENST00000614932 GRIP2Q9C0E4 1043 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 CNGB3Q9NQW8 809 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 KLHL3Q9UH77 587 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 SUGT1Q9Y2Z0 365 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 ARIH1Q9Y4X5 557 aaPredicted RBP10.73□□□□□ -0.69
VPS39-214ENST00000614932 RPTORQ8N122 1335 aa10.73□□□□□ -0.69
VPS39-214ENST00000614932 C15orf38-AP3S2A0A0A6YYH1 394 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 IGKV6D-41A0A0C4DH26 115 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 BUD23O43709 281 aaKnown RBP10.72□□□□□ -0.69
VPS39-214ENST00000614932 BAG2O95816 211 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 KRT4P19013 534 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 AMPD1P23109 780 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 FOXN2P32314 431 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 S100A5P33763 92 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 STAT3P40763 770 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 PRKG1Q13976 671 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 MPP2Q14168 576 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 GPR162Q16538 588 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 ECM1Q16610 540 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 MMEL1Q495T6 779 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 DACT2Q5SW24 774 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 PCNX4Q63HM2 1172 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 SLFN13Q68D06 897 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 ELMSAN1Q6PJG2 1045 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 POTEHQ6S545 545 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 RFPL4BQ6ZWI9 263 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 ARPINQ7Z6K5 226 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 CCDC84Q86UT8 332 aaPredicted RBP10.72□□□□□ -0.69
VPS39-214ENST00000614932 OSTM1Q86WC4 334 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 IFNLR1Q8IU57 520 aaPredicted RBP10.72□□□□□ -0.69
VPS39-214ENST00000614932 CDAN1Q8IWY9 1227 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 MORC4Q8TE76 937 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 SNX29Q8TEQ0 813 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 EGLN2Q96KS0 407 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 TRIM9Q9C026 710 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 NKIRAS1Q9NYS0 192 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 CRNNQ9UBG3 495 aaPredicted RBP10.72□□□□□ -0.69
VPS39-214ENST00000614932 KIAA1257Q9ULG3 409 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 PHTF1Q9UMS5 762 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.72□□□□□ -0.69
VPS39-214ENST00000614932 ZNF536O15090 1300 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 MCF2LO15068 1137 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 DNAJC6O75061 913 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 FARP2O94887 1054 aaPredicted RBP10.72□□□□□ -0.69
VPS39-214ENST00000614932 ENO2P09104 434 aaPredicted RBP10.72□□□□□ -0.69
VPS39-214ENST00000614932 BRAFP15056 766 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 IL4RP24394 825 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 PLTPP55058 493 aa10.72□□□□□ -0.69
VPS39-214ENST00000614932 RRP1BQ14684 758 aaKnown RBP10.72□□□□□ -0.69
VPS39-214ENST00000614932 KCNJ8Q15842 424 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms