RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 LRRFIP2Q9Y608 721 aaKnown RBP5.36□□□□□ -1.55
LINC00540-201ENST00000611481 A0A1W2PRX2 142 aa5.35□□□□□ -1.55
LINC00540-201ENST00000611481 GLRX3O76003 335 aaKnown RBP5.35□□□□□ -1.55
LINC00540-201ENST00000611481 STK10O94804 968 aaKnown RBP5.35□□□□□ -1.55
LINC00540-201ENST00000611481 PDGFBP01127 241 aaPredicted RBP5.35□□□□□ -1.55
LINC00540-201ENST00000611481 PCCAP05165 728 aaPredicted RBP5.35□□□□□ -1.55
LINC00540-201ENST00000611481 NAT1P18440 290 aa5.35□□□□□ -1.55
LINC00540-201ENST00000611481 STAT5BP51692 787 aa5.35□□□□□ -1.55
LINC00540-201ENST00000611481 SLC25A3Q00325 362 aa5.35□□□□□ -1.55
LINC00540-201ENST00000611481 COL10A1Q03692 680 aa5.35□□□□□ -1.55
LINC00540-201ENST00000611481 HNRNPA0Q13151 305 aaKnown RBP5.35□□□□□ -1.55
LINC00540-201ENST00000611481 CNGB1Q14028 1251 aaPredicted RBP5.35□□□□□ -1.55
LINC00540-201ENST00000611481 NFE2L2Q16236 605 aa5.35□□□□□ -1.55
LINC00540-201ENST00000611481 APOBEC3HQ6NTF7 200 aaKnown RBP5.35□□□□□ -1.55
LINC00540-201ENST00000611481 C15orf52Q6ZUT6 534 aaKnown RBP5.35□□□□□ -1.55
LINC00540-201ENST00000611481 ANKS3Q6ZW76 656 aa5.35□□□□□ -1.55
LINC00540-201ENST00000611481 RNF180Q86T96 592 aa5.35□□□□□ -1.55
LINC00540-201ENST00000611481 SCUBE1Q8IWY4 988 aa5.35□□□□□ -1.55
LINC00540-201ENST00000611481 RPUSD2Q8IZ73 545 aaKnown RBP5.35□□□□□ -1.55
LINC00540-201ENST00000611481 RABGGTAQ92696 567 aa5.35□□□□□ -1.55
LINC00540-201ENST00000611481 PTPRN2Q92932 1015 aa5.35□□□□□ -1.55
LINC00540-201ENST00000611481 MPHOSPH8Q99549 860 aa5.35□□□□□ -1.55
LINC00540-201ENST00000611481 MTUS1Q9ULD2 1270 aa5.35□□□□□ -1.55
LINC00540-201ENST00000611481 CBLCQ9ULV8 474 aa5.35□□□□□ -1.55
LINC00540-201ENST00000611481 LOC285556D6RIA3 1793 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 RFX7Q2KHR2 1363 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 UMODL1Q5DID0 1318 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 MROH7Q68CQ1 1323 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 SLC15A5A6NIM6 579 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 ZNF561-AS1K7EIQ3 104 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 TPD52L2O43399 206 aaKnown RBP5.34□□□□□ -1.55
LINC00540-201ENST00000611481 RARBP10826 455 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 SCNN1GP51170 649 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 CCL23P55773 120 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 GUCY1A3Q02108 690 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 CLUL1Q15846 466 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 NUP133Q8WUM0 1156 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 LPPQ93052 612 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 MIEF2Q96C03 454 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 GPRC5BQ9NZH0 403 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 CHPF2Q9P2E5 772 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 VWA7Q9Y334 891 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 KNSTRNQ9Y448 316 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 PCDHA8Q9Y5H6 950 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 DOCK1Q14185 1865 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 PCSK5Q92824 1860 aa5.34□□□□□ -1.55
LINC00540-201ENST00000611481 KIF28PB7ZC32 967 aa5.33□□□□□ -1.56
LINC00540-201ENST00000611481 ARVCFO00192 962 aa5.33□□□□□ -1.56
LINC00540-201ENST00000611481 CTNND1O60716 968 aaKnown RBP5.33□□□□□ -1.56
LINC00540-201ENST00000611481 LMNAP02545 664 aaKnown RBP5.33□□□□□ -1.56
LINC00540-201ENST00000611481 MMEP08473 750 aa5.33□□□□□ -1.56
LINC00540-201ENST00000611481 HOXC6P09630 235 aa5.33□□□□□ -1.56
LINC00540-201ENST00000611481 SRGAP2CP0DJJ0 459 aa5.33□□□□□ -1.56
LINC00540-201ENST00000611481 LMO1P25800 156 aa5.33□□□□□ -1.56
LINC00540-201ENST00000611481 MAN2A2P49641 1150 aa5.33□□□□□ -1.56
LINC00540-201ENST00000611481 ACLYP53396 1101 aa5.33□□□□□ -1.56
LINC00540-201ENST00000611481 ATXN1P54253 815 aaKnown RBP5.33□□□□□ -1.56
LINC00540-201ENST00000611481 CHAF1AQ13111 956 aaPredicted RBP5.33□□□□□ -1.56
LINC00540-201ENST00000611481 FAM47CQ5HY64 1035 aa5.33□□□□□ -1.56
LINC00540-201ENST00000611481 Q6ZRM9 215 aa5.33□□□□□ -1.56
LINC00540-201ENST00000611481 DPP9Q86TI2 863 aa5.33□□□□□ -1.56
LINC00540-201ENST00000611481 JAZF1Q86VZ6 243 aa5.33□□□□□ -1.56
LINC00540-201ENST00000611481 MCF2L2Q86YR7 1114 aa5.33□□□□□ -1.56
LINC00540-201ENST00000611481 GSPT2Q8IYD1 628 aaKnown RBP5.33□□□□□ -1.56
LINC00540-201ENST00000611481 TMEM105Q8N8V8 129 aa5.33□□□□□ -1.56
LINC00540-201ENST00000611481 ZNF669Q96BR6 464 aaPredicted RBP5.33□□□□□ -1.56
LINC00540-201ENST00000611481 PABPC5Q96DU9 382 aaKnown RBP5.33□□□□□ -1.56
LINC00540-201ENST00000611481 MRFAP1L1Q96HT8 127 aa5.33□□□□□ -1.56
LINC00540-201ENST00000611481 MYD88Q99836 296 aa5.33□□□□□ -1.56
LINC00540-201ENST00000611481 NRDE2Q9H7Z3 1164 aa5.33□□□□□ -1.56
LINC00540-201ENST00000611481 SMURF1Q9HCE7 757 aa5.33□□□□□ -1.56
LINC00540-201ENST00000611481 KLHL42Q9P2K6 505 aa5.33□□□□□ -1.56
LINC00540-201ENST00000611481 TSPYL4Q9UJ04 414 aa5.33□□□□□ -1.56
LINC00540-201ENST00000611481 CTDP1Q9Y5B0 961 aaPredicted RBP5.33□□□□□ -1.56
LINC00540-201ENST00000611481 WDR87Q6ZQQ6 2873 aa5.32□□□□□ -1.56
LINC00540-201ENST00000611481 LCHNA4D1U4 455 aa5.32□□□□□ -1.56
LINC00540-201ENST00000611481 KCNK3O14649 394 aa5.32□□□□□ -1.56
LINC00540-201ENST00000611481 KLF4O43474 513 aa5.32□□□□□ -1.56
LINC00540-201ENST00000611481 FBLP22087 321 aaKnown RBP5.32□□□□□ -1.56
LINC00540-201ENST00000611481 PTGS2P35354 604 aa5.32□□□□□ -1.56
LINC00540-201ENST00000611481 GYG1P46976 350 aa5.32□□□□□ -1.56
LINC00540-201ENST00000611481 CDK7P50613 346 aa5.32□□□□□ -1.56
LINC00540-201ENST00000611481 CCNA1P78396 465 aa5.32□□□□□ -1.56
LINC00540-201ENST00000611481 GRB14Q14449 540 aa5.32□□□□□ -1.56
LINC00540-201ENST00000611481 BMS1Q14692 1282 aaKnown RBP5.32□□□□□ -1.56
LINC00540-201ENST00000611481 SEC23AQ15436 765 aa5.32□□□□□ -1.56
LINC00540-201ENST00000611481 GORABQ5T7V8 394 aa5.32□□□□□ -1.56
LINC00540-201ENST00000611481 HERC6Q8IVU3 1022 aa5.32□□□□□ -1.56
LINC00540-201ENST00000611481 DCLK2Q8N568 766 aa5.32□□□□□ -1.56
LINC00540-201ENST00000611481 CCDC191Q8NCU4 936 aa5.32□□□□□ -1.56
LINC00540-201ENST00000611481 UBE2Q2Q8WVN8 375 aa5.32□□□□□ -1.56
LINC00540-201ENST00000611481 ASB15Q8WXK1 588 aa5.32□□□□□ -1.56
LINC00540-201ENST00000611481 HAS1Q92839 578 aa5.32□□□□□ -1.56
LINC00540-201ENST00000611481 SCLYQ96I15 445 aa5.32□□□□□ -1.56
LINC00540-201ENST00000611481 HIPK3Q9H422 1215 aa5.32□□□□□ -1.56
LINC00540-201ENST00000611481 CWC25Q9NXE8 425 aaPredicted RBP5.32□□□□□ -1.56
LINC00540-201ENST00000611481 MAGEC2Q9UBF1 373 aaPredicted RBP5.32□□□□□ -1.56
LINC00540-201ENST00000611481 A0A1B0GUL6 1792 aa5.32□□□□□ -1.56
LINC00540-201ENST00000611481 SMCHD1A6NHR9 2005 aa5.31□□□□□ -1.56
LINC00540-201ENST00000611481 ASPMQ8IZT6 3477 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms