RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 PRSS36Q5K4E3 855 aa12.42□□□□□ -0.42
LINC00539-204ENST00000608957 CDKAL1Q5VV42 579 aa12.42□□□□□ -0.42
LINC00539-204ENST00000608957 CWF19L1Q69YN2 538 aaKnown RBP12.42□□□□□ -0.42
LINC00539-204ENST00000608957 OVOS1Q6IE37 1185 aa12.42□□□□□ -0.42
LINC00539-204ENST00000608957 CENPPQ6IPU0 288 aa12.42□□□□□ -0.42
LINC00539-204ENST00000608957 STXBP4Q6ZWJ1 553 aa12.42□□□□□ -0.42
LINC00539-204ENST00000608957 CBWD2Q8IUF1 395 aa12.42□□□□□ -0.42
LINC00539-204ENST00000608957 NPAS3Q8IXF0 933 aa12.42□□□□□ -0.42
LINC00539-204ENST00000608957 GPD1LQ8N335 351 aa12.42□□□□□ -0.42
LINC00539-204ENST00000608957 NOC3LQ8WTT2 800 aaKnown RBP12.42□□□□□ -0.42
LINC00539-204ENST00000608957 TSG101Q99816 390 aa12.42□□□□□ -0.42
LINC00539-204ENST00000608957 TRIM5Q9C035 493 aa12.42□□□□□ -0.42
LINC00539-204ENST00000608957 AVENQ9NQS1 362 aaPredicted RBP12.42□□□□□ -0.42
LINC00539-204ENST00000608957 RBAKQ9NYW8 714 aaPredicted RBP12.42□□□□□ -0.42
LINC00539-204ENST00000608957 SIX4Q9UIU6 781 aa12.42□□□□□ -0.42
LINC00539-204ENST00000608957 YIPF1Q9Y548 306 aa12.42□□□□□ -0.42
LINC00539-204ENST00000608957 NUMBLQ9Y6R0 609 aa12.42□□□□□ -0.42
LINC00539-204ENST00000608957 MTMR11A4FU01 709 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 KRBA1A5PL33 1030 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 CYB561D2O14569 222 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 LRG1P02750 347 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 ODC1P11926 461 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 AVPR2P30518 371 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 POLR2BP30876 1174 aaKnown RBP12.41□□□□□ -0.42
LINC00539-204ENST00000608957 ELF1P32519 619 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 ZNF75DP51815 510 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 TFAMQ00059 246 aaKnown RBP12.41□□□□□ -0.42
LINC00539-204ENST00000608957 FANCCQ00597 558 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 TWF1Q12792 350 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 GPR17Q13304 367 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 WSCD1Q658N2 575 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 NT5DC4Q86YG4 428 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 NELFCDQ8IXH7 590 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 TMEM105Q8N8V8 129 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 OR5B17Q8NGF7 314 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 PDLIM2Q96JY6 352 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 PPP1R9BQ96SB3 815 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 DUSP9Q99956 384 aaKnown RBP12.41□□□□□ -0.42
LINC00539-204ENST00000608957 CORO1BQ9BR76 489 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 LRRC3Q9BY71 257 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 MTMR12Q9C0I1 747 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 THAP9Q9H5L6 903 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 AGPAT3Q9NRZ7 376 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 SAMSN1Q9NSI8 373 aaKnown RBP12.41□□□□□ -0.42
LINC00539-204ENST00000608957 HSPBP1Q9NZL4 362 aa12.41□□□□□ -0.42
LINC00539-204ENST00000608957 OR6C75A6NL08 312 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 CLIC2O15247 247 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 SOAT2O75908 522 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 ITGB3P05106 788 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 CFHP08603 1231 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 PTPN2P17706 415 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 CDK11BP21127 795 aaKnown RBP12.4□□□□□ -0.42
LINC00539-204ENST00000608957 TCF15Q12870 199 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 DUSP4Q13115 394 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 MYBPC2Q14324 1141 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 KNOP1Q1ED39 458 aaKnown RBP12.4□□□□□ -0.42
LINC00539-204ENST00000608957 ZCWPW2Q504Y3 356 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 HSP90AA4PQ58FG1 418 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 ANKRD40Q6AI12 368 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 USP37Q86T82 979 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 LRRTM3Q86VH5 581 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 OSTM1Q86WC4 334 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 TMC8Q8IU68 726 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 SUGP1Q8IWZ8 645 aaKnown RBP12.4□□□□□ -0.42
LINC00539-204ENST00000608957 CSGALNACT2Q8N6G5 542 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 ATAD1Q8NBU5 361 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 NXPE3Q969Y0 559 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 MCRS1Q96EZ8 462 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 PLA2G2FQ9BZM2 168 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 ZCWPW1Q9H0M4 648 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 KCTD10Q9H3F6 313 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 IFNKQ9P0W0 207 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 AGAP1Q9UPQ3 857 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 SLC27A5Q9Y2P5 690 aa12.4□□□□□ -0.42
LINC00539-204ENST00000608957 NCANO14594 1321 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 PATJQ8NI35 1801 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 KPNA7A9QM74 516 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 KIAA0391O15091 583 aaKnown RBP12.39□□□□□ -0.43
LINC00539-204ENST00000608957 CBFA2T2O43439 604 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 HCRTO43612 131 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 PI15O43692 258 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 FGFR1OPO95684 399 aaKnown RBP12.39□□□□□ -0.43
LINC00539-204ENST00000608957 SERPINC1P01008 464 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 SRFP11831 508 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 GJA1P17302 382 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 PAX3P23760 479 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 FCARP24071 287 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 CDC25BP30305 580 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 EPHA5P54756 1037 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 CCDC142Q17RM4 750 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.39□□□□□ -0.43
LINC00539-204ENST00000608957 FAM114A1Q8IWE2 563 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 PDCL2Q8N4E4 241 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 ANKRD20A12PQ8NF67 263 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 PLEKHO2Q8TD55 490 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 GPR152Q8TDT2 470 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 FAM122AQ96E09 287 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 MRFAP1L1Q96HT8 127 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 KXD1Q9BQD3 176 aa12.39□□□□□ -0.43
LINC00539-204ENST00000608957 SRRTQ9BXP5 876 aaKnown RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms