RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 OTOP3Q7RTS5 596 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 THEM5Q8N1Q8 247 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 PDCL2Q8N4E4 241 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 TMEM105Q8N8V8 129 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 TDRD5Q8NAT2 981 aaKnown RBP17.38■□□□□ 0.37
LSM4-206ENST00000600289 OR10T2Q8NGX3 314 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 C2orf15Q8WU43 125 aaKnown RBP17.38■□□□□ 0.37
LSM4-206ENST00000600289 ERCC4Q92889 916 aaPredicted RBP17.38■□□□□ 0.37
LSM4-206ENST00000600289 ACSF2Q96CM8 615 aaPredicted RBP17.38■□□□□ 0.37
LSM4-206ENST00000600289 VRTNQ9H8Y1 702 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 PIDD1Q9HB75 910 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 AVENQ9NQS1 362 aaPredicted RBP17.38■□□□□ 0.37
LSM4-206ENST00000600289 MAN1B1Q9UKM7 699 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 INSL5Q9Y5Q6 135 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 CHD6Q8TD26 2715 aa17.38■□□□□ 0.37
LSM4-206ENST00000600289 OBSL1O75147 1896 aa17.37■□□□□ 0.37
LSM4-206ENST00000600289 DENND4CQ5VZ89 1909 aa17.37■□□□□ 0.37
LSM4-206ENST00000600289 PRRG1O14668 218 aa17.37■□□□□ 0.37
LSM4-206ENST00000600289 GABRDO14764 452 aa17.37■□□□□ 0.37
LSM4-206ENST00000600289 AKAP3O75969 853 aa17.37■□□□□ 0.37
LSM4-206ENST00000600289 FAM163BP0C2L3 166 aa17.37■□□□□ 0.37
LSM4-206ENST00000600289 ARPP19P56211 112 aa17.37■□□□□ 0.37
LSM4-206ENST00000600289 LRRC63Q05C16 580 aa17.37■□□□□ 0.37
LSM4-206ENST00000600289 ADCY1Q08828 1119 aa17.37■□□□□ 0.37
LSM4-206ENST00000600289 MORC3Q14149 939 aa17.37■□□□□ 0.37
LSM4-206ENST00000600289 CEP135Q66GS9 1140 aa17.37■□□□□ 0.37
LSM4-206ENST00000600289 CYP4F11Q9HBI6 524 aa17.37■□□□□ 0.37
LSM4-206ENST00000600289 SNX9Q9Y5X1 595 aa17.37■□□□□ 0.37
LSM4-206ENST00000600289 CEP250Q9BV73 2442 aa17.36■□□□□ 0.37
LSM4-206ENST00000600289 MTMR11A4FU01 709 aa17.36■□□□□ 0.37
LSM4-206ENST00000600289 CCL16O15467 120 aa17.36■□□□□ 0.37
LSM4-206ENST00000600289 CST3P01034 146 aaPredicted RBP17.36■□□□□ 0.37
LSM4-206ENST00000600289 LRG1P02750 347 aa17.36■□□□□ 0.37
LSM4-206ENST00000600289 C4BPAP04003 597 aaKnown RBP17.36■□□□□ 0.37
LSM4-206ENST00000600289 OR4Q2P0C623 313 aa17.36■□□□□ 0.37
LSM4-206ENST00000600289 PSMC2P35998 433 aaKnown RBP17.36■□□□□ 0.37
LSM4-206ENST00000600289 LHX1P48742 406 aa17.36■□□□□ 0.37
LSM4-206ENST00000600289 PLD1Q13393 1074 aa17.36■□□□□ 0.37
LSM4-206ENST00000600289 ADAM9Q13443 819 aa17.36■□□□□ 0.37
LSM4-206ENST00000600289 STIM1Q13586 685 aa17.36■□□□□ 0.37
LSM4-206ENST00000600289 SOWAHAQ2M3V2 549 aa17.36■□□□□ 0.37
LSM4-206ENST00000600289 ZACNQ401N2 412 aa17.36■□□□□ 0.37
LSM4-206ENST00000600289 C1orf220Q5T0J3 134 aa17.36■□□□□ 0.37
LSM4-206ENST00000600289 TDRD10Q5VZ19 366 aaKnown RBP17.36■□□□□ 0.37
LSM4-206ENST00000600289 DGLUCYQ7Z3D6 616 aa17.36■□□□□ 0.37
LSM4-206ENST00000600289 FAM186BQ8IYM0 893 aa17.36■□□□□ 0.37
LSM4-206ENST00000600289 TRIML1Q8N9V2 468 aa17.36■□□□□ 0.37
LSM4-206ENST00000600289 SYAP1Q96A49 352 aaPredicted RBP17.36■□□□□ 0.37
LSM4-206ENST00000600289 DHTKD1Q96HY7 919 aaPredicted RBP17.36■□□□□ 0.37
LSM4-206ENST00000600289 TSG101Q99816 390 aa17.36■□□□□ 0.37
LSM4-206ENST00000600289 ACBD6Q9BR61 282 aa17.36■□□□□ 0.37
LSM4-206ENST00000600289 XYLT2Q9H1B5 865 aa17.36■□□□□ 0.37
LSM4-206ENST00000600289 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.36■□□□□ 0.37
LSM4-206ENST00000600289 EPS15L1Q9UBC2 864 aa17.36■□□□□ 0.37
LSM4-206ENST00000600289 ZFP37Q9Y6Q3 630 aaPredicted RBP17.36■□□□□ 0.37
LSM4-206ENST00000600289 GREB1Q4ZG55 1949 aa17.36■□□□□ 0.37
LSM4-206ENST00000600289 NUP210Q8TEM1 1887 aaPredicted RBP17.35■□□□□ 0.37
LSM4-206ENST00000600289 MAP1BP46821 2468 aaKnown RBP17.35■□□□□ 0.37
LSM4-206ENST00000600289 TULP1O00294 542 aaPredicted RBP17.35■□□□□ 0.37
LSM4-206ENST00000600289 SLC16A3O15427 465 aaKnown RBP17.35■□□□□ 0.37
LSM4-206ENST00000600289 VAMP7P51809 220 aa17.35■□□□□ 0.37
LSM4-206ENST00000600289 DLG4P78352 724 aa17.35■□□□□ 0.37
LSM4-206ENST00000600289 MYL7Q01449 175 aa17.35■□□□□ 0.37
LSM4-206ENST00000600289 GRASPQ7Z6J2 395 aaPredicted RBP17.35■□□□□ 0.37
LSM4-206ENST00000600289 DCP1BQ8IZD4 617 aaKnown RBP17.35■□□□□ 0.37
LSM4-206ENST00000600289 ADGRF2Q8IZF7 708 aa17.35■□□□□ 0.37
LSM4-206ENST00000600289 SPPL2BQ8TCT7 592 aa17.35■□□□□ 0.37
LSM4-206ENST00000600289 KBTBD7Q8WVZ9 684 aa17.35■□□□□ 0.37
LSM4-206ENST00000600289 TMEM209Q96SK2 561 aa17.35■□□□□ 0.37
LSM4-206ENST00000600289 TSHZ2Q9NRE2 1034 aa17.35■□□□□ 0.37
LSM4-206ENST00000600289 DDX43Q9NXZ2 648 aaKnown RBP17.35■□□□□ 0.37
LSM4-206ENST00000600289 YIPF1Q9Y548 306 aa17.35■□□□□ 0.37
LSM4-206ENST00000600289 PSMA7O14818 248 aa17.34■□□□□ 0.37
LSM4-206ENST00000600289 CETN3O15182 167 aa17.34■□□□□ 0.37
LSM4-206ENST00000600289 N4BP1O75113 896 aaKnown RBP17.34■□□□□ 0.37
LSM4-206ENST00000600289 TACC1O75410 805 aa17.34■□□□□ 0.37
LSM4-206ENST00000600289 MICAL2O94851 1124 aa17.34■□□□□ 0.37
LSM4-206ENST00000600289 KRT13P13646 458 aa17.34■□□□□ 0.37
LSM4-206ENST00000600289 PTPN2P17706 415 aa17.34■□□□□ 0.37
LSM4-206ENST00000600289 BMP6P22004 513 aa17.34■□□□□ 0.37
LSM4-206ENST00000600289 WARSP23381 471 aaKnown RBP17.34■□□□□ 0.37
LSM4-206ENST00000600289 FSHRP23945 695 aa17.34■□□□□ 0.37
LSM4-206ENST00000600289 CCNE1P24864 410 aa17.34■□□□□ 0.37
LSM4-206ENST00000600289 EPHA5P54756 1037 aa17.34■□□□□ 0.37
LSM4-206ENST00000600289 FKBP3Q00688 224 aaKnown RBP17.34■□□□□ 0.37
LSM4-206ENST00000600289 TSPY1Q01534 308 aa17.34■□□□□ 0.37
LSM4-206ENST00000600289 TRPC3Q13507 836 aa17.34■□□□□ 0.37
LSM4-206ENST00000600289 SLC39A12Q504Y0 691 aa17.34■□□□□ 0.37
LSM4-206ENST00000600289 LEMD2Q8NC56 503 aa17.34■□□□□ 0.37
LSM4-206ENST00000600289 TAF4BQ92750 862 aa17.34■□□□□ 0.37
LSM4-206ENST00000600289 GBP4Q96PP9 640 aa17.34■□□□□ 0.37
LSM4-206ENST00000600289 PKMYT1Q99640 499 aa17.34■□□□□ 0.37
LSM4-206ENST00000600289 CRISPLD1Q9H336 500 aa17.34■□□□□ 0.37
LSM4-206ENST00000600289 DNMT3BQ9UBC3 853 aaKnown RBP17.34■□□□□ 0.37
LSM4-206ENST00000600289 PHACTR2O75167 634 aa17.33■□□□□ 0.36
LSM4-206ENST00000600289 VNN1O95497 513 aa17.33■□□□□ 0.36
LSM4-206ENST00000600289 CD44P16070 742 aaKnown RBP17.33■□□□□ 0.36
LSM4-206ENST00000600289 PCSK1P29120 753 aa17.33■□□□□ 0.36
LSM4-206ENST00000600289 GTF2H1P32780 548 aa17.33■□□□□ 0.36
LSM4-206ENST00000600289 PMS1P54277 932 aaKnown RBP17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms