RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 ALADP13716 330 aa14.85□□□□□ -0.03
UPF1-205ENST00000598209 PTPN2P17706 415 aa14.85□□□□□ -0.03
UPF1-205ENST00000598209 ACAT1P24752 427 aaKnown RBP14.85□□□□□ -0.03
UPF1-205ENST00000598209 TNNC1P63316 161 aa14.85□□□□□ -0.03
UPF1-205ENST00000598209 SMARCB1Q12824 385 aa14.85□□□□□ -0.03
UPF1-205ENST00000598209 PLD1Q13393 1074 aa14.85□□□□□ -0.03
UPF1-205ENST00000598209 ZNF699Q32M78 642 aa14.85□□□□□ -0.03
UPF1-205ENST00000598209 PABPC1LQ4VXU2 614 aaKnown RBP14.85□□□□□ -0.03
UPF1-205ENST00000598209 INTS6LQ5JSJ4 861 aaKnown RBP14.85□□□□□ -0.03
UPF1-205ENST00000598209 ELMOD1Q8N336 334 aa14.85□□□□□ -0.03
UPF1-205ENST00000598209 TRIML1Q8N9V2 468 aa14.85□□□□□ -0.03
UPF1-205ENST00000598209 KBTBD7Q8WVZ9 684 aa14.85□□□□□ -0.03
UPF1-205ENST00000598209 CLSTN2Q9H4D0 955 aa14.85□□□□□ -0.03
UPF1-205ENST00000598209 TMLHEQ9NVH6 421 aa14.85□□□□□ -0.03
UPF1-205ENST00000598209 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.85□□□□□ -0.03
UPF1-205ENST00000598209 NXF1Q9UBU9 619 aaKnown RBP14.85□□□□□ -0.03
UPF1-205ENST00000598209 LIMD1Q9UGP4 676 aa14.85□□□□□ -0.03
UPF1-205ENST00000598209 PTPRDP23468 1912 aa14.85□□□□□ -0.03
UPF1-205ENST00000598209 HCRTO43612 131 aa14.84□□□□□ -0.03
UPF1-205ENST00000598209 RHOP08100 348 aa14.84□□□□□ -0.03
UPF1-205ENST00000598209 WARSP23381 471 aaKnown RBP14.84□□□□□ -0.03
UPF1-205ENST00000598209 PCSK1P29120 753 aa14.84□□□□□ -0.03
UPF1-205ENST00000598209 PIK3CAP42336 1068 aa14.84□□□□□ -0.03
UPF1-205ENST00000598209 ALDH1A3P47895 512 aa14.84□□□□□ -0.03
UPF1-205ENST00000598209 GCLMP48507 274 aa14.84□□□□□ -0.03
UPF1-205ENST00000598209 PPP3CAQ08209 521 aa14.84□□□□□ -0.03
UPF1-205ENST00000598209 ZNF667Q5HYK9 610 aa14.84□□□□□ -0.03
UPF1-205ENST00000598209 ITFG1Q8TB96 612 aa14.84□□□□□ -0.03
UPF1-205ENST00000598209 SPPL2BQ8TCT7 592 aa14.84□□□□□ -0.03
UPF1-205ENST00000598209 C2orf15Q8WU43 125 aaKnown RBP14.84□□□□□ -0.03
UPF1-205ENST00000598209 NELFBQ8WX92 580 aa14.84□□□□□ -0.03
UPF1-205ENST00000598209 ZNF512Q96ME7 567 aaPredicted RBP14.84□□□□□ -0.03
UPF1-205ENST00000598209 CORO1BQ9BR76 489 aa14.84□□□□□ -0.03
UPF1-205ENST00000598209 MRPL45Q9BRJ2 306 aaKnown RBP14.84□□□□□ -0.03
UPF1-205ENST00000598209 MMRN2Q9H8L6 949 aa14.84□□□□□ -0.03
UPF1-205ENST00000598209 VRTNQ9H8Y1 702 aa14.84□□□□□ -0.03
UPF1-205ENST00000598209 ABI2Q9NYB9 513 aaPredicted RBP14.84□□□□□ -0.03
UPF1-205ENST00000598209 CEP72Q9P209 647 aa14.84□□□□□ -0.03
UPF1-205ENST00000598209 HSFX1Q9UBD0 423 aa14.84□□□□□ -0.03
UPF1-205ENST00000598209 CTNND2Q9UQB3 1225 aa14.84□□□□□ -0.03
UPF1-205ENST00000598209 BICDL2A1A5D9 508 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 SLC16A3O15427 465 aaKnown RBP14.83□□□□□ -0.04
UPF1-205ENST00000598209 TACC1O75410 805 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 SOAT2O75908 522 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 HLA-DRAP01903 254 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 ASGR2P07307 311 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 FAM163BP0C2L3 166 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 LMO2P25791 158 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 TUFMP49411 452 aaKnown RBP14.83□□□□□ -0.04
UPF1-205ENST00000598209 EPHB3P54753 998 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 MCCD1P59942 119 aaPredicted RBP14.83□□□□□ -0.04
UPF1-205ENST00000598209 NFE2Q16621 373 aaPredicted RBP14.83□□□□□ -0.04
UPF1-205ENST00000598209 PTPN21Q16825 1174 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 SGSM1Q2NKQ1 1148 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 MGAT5BQ3V5L5 792 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 IQCEQ6IPM2 695 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 ELMO3Q96BJ8 720 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 PKMYT1Q99640 499 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 SEPT5Q99719 369 aaPredicted RBP14.83□□□□□ -0.04
UPF1-205ENST00000598209 DUSP9Q99956 384 aaKnown RBP14.83□□□□□ -0.04
UPF1-205ENST00000598209 SYT15Q9BQS2 421 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 DNAJC25Q9H1X3 360 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 SNX25Q9H3E2 840 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 AVENQ9NQS1 362 aaPredicted RBP14.83□□□□□ -0.04
UPF1-205ENST00000598209 EPS15L1Q9UBC2 864 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 GTF3C4Q9UKN8 822 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 CDH9Q9ULB4 789 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 MRPS23Q9Y3D9 190 aaKnown RBP14.83□□□□□ -0.04
UPF1-205ENST00000598209 PCDHB5Q9Y5E4 795 aa14.83□□□□□ -0.04
UPF1-205ENST00000598209 DENND4CQ5VZ89 1909 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 GOLGA6L22H0YM25 854 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 ATP2C2O75185 946 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 PDGFRBP09619 1106 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 HAPLN1P10915 354 aaPredicted RBP14.82□□□□□ -0.04
UPF1-205ENST00000598209 LAMP2P13473 410 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 GTF2H1P32780 548 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 GNL1P36915 607 aaPredicted RBP14.82□□□□□ -0.04
UPF1-205ENST00000598209 STX17P56962 302 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 PSMC1P62191 440 aaKnown RBP14.82□□□□□ -0.04
UPF1-205ENST00000598209 PAK1Q13153 545 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 CCDC142Q17RM4 750 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 SLC5A9Q2M3M2 681 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 PRSS36Q5K4E3 855 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 TTI2Q6NXR4 508 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 FOXR2Q6PJQ5 311 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 SCARA5Q6ZMJ2 495 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 HS6ST3Q8IZP7 471 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 OR6B3Q8NGW1 331 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 ING5Q8WYH8 240 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 TAF4BQ92750 862 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 FGF13Q92913 245 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 CEP63Q96MT8 703 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 PI4K2AQ9BTU6 479 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 NUP62CLQ9H1M0 184 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 SMYD3Q9H7B4 428 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 TMEM8AQ9HCN3 771 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 CDH7Q9ULB5 785 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 NME7Q9Y5B8 376 aa14.82□□□□□ -0.04
UPF1-205ENST00000598209 ZFP37Q9Y6Q3 630 aaPredicted RBP14.82□□□□□ -0.04
UPF1-205ENST00000598209 GREB1Q4ZG55 1949 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms