RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.53□□□□□ -0.24
TRIM28-212ENST00000597995 K7ENM7 598 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 TRAK2O60296 914 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 SOAT2O75908 522 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 FAM13AO94988 1023 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 GTF2BQ00403 316 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 SRSF5Q13243 272 aaKnown RBP13.53□□□□□ -0.24
TRIM28-212ENST00000597995 TMEM132DQ14C87 1099 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 PON2Q15165 354 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 ITPRIPL2Q3MIP1 535 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 MGAT5BQ3V5L5 792 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 SLC39A12Q504Y0 691 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 GPBP1Q86WP2 473 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 METTL23Q86XA0 190 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 THEM5Q8N1Q8 247 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 OR10T2Q8NGX3 314 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 DDX1Q92499 740 aaKnown RBP13.53□□□□□ -0.24
TRIM28-212ENST00000597995 FAM212AQ96EL1 285 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 ZFYVE19Q96K21 471 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 CLIC6Q96NY7 704 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 GCNAQ96QF7 691 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 USP28Q96RU2 1077 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 CCSER1Q9C0I3 900 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 IL21Q9HBE4 155 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 C2CD2Q9Y426 696 aa13.53□□□□□ -0.24
TRIM28-212ENST00000597995 CCDC163A0A0D9SF12 145 aa13.52□□□□□ -0.25
TRIM28-212ENST00000597995 SOBPA7XYQ1 873 aa13.52□□□□□ -0.25
TRIM28-212ENST00000597995 PRAMEF12O95522 483 aa13.52□□□□□ -0.25
TRIM28-212ENST00000597995 NFICP08651 508 aa13.52□□□□□ -0.25
TRIM28-212ENST00000597995 ATF6P18850 670 aa13.52□□□□□ -0.25
TRIM28-212ENST00000597995 CEBPZQ03701 1054 aaKnown RBP13.52□□□□□ -0.25
TRIM28-212ENST00000597995 DHX8Q14562 1220 aaKnown RBP13.52□□□□□ -0.25
TRIM28-212ENST00000597995 HEATR6Q6AI08 1181 aaKnown RBP13.52□□□□□ -0.25
TRIM28-212ENST00000597995 SLFN12LQ6IEE8 588 aa13.52□□□□□ -0.25
TRIM28-212ENST00000597995 SLC39A4Q6P5W5 647 aa13.52□□□□□ -0.25
TRIM28-212ENST00000597995 CEP68Q76N32 757 aa13.52□□□□□ -0.25
TRIM28-212ENST00000597995 FAM160A2Q8N612 972 aaPredicted RBP13.52□□□□□ -0.25
TRIM28-212ENST00000597995 TTC8Q8TAM2 541 aa13.52□□□□□ -0.25
TRIM28-212ENST00000597995 SPPL2BQ8TCT7 592 aa13.52□□□□□ -0.25
TRIM28-212ENST00000597995 RAD54LQ92698 747 aa13.52□□□□□ -0.25
TRIM28-212ENST00000597995 LOXL4Q96JB6 756 aa13.52□□□□□ -0.25
TRIM28-212ENST00000597995 FIZ1Q96SL8 496 aa13.52□□□□□ -0.25
TRIM28-212ENST00000597995 SEPT5Q99719 369 aaPredicted RBP13.52□□□□□ -0.25
TRIM28-212ENST00000597995 LPIN3Q9BQK8 851 aa13.52□□□□□ -0.25
TRIM28-212ENST00000597995 SLC46A2Q9BY10 475 aa13.52□□□□□ -0.25
TRIM28-212ENST00000597995 SRPRBQ9Y5M8 271 aaKnown RBP13.52□□□□□ -0.25
TRIM28-212ENST00000597995 STYXL1Q9Y6J8 313 aa13.52□□□□□ -0.25
TRIM28-212ENST00000597995 CYB561D2O14569 222 aa13.51□□□□□ -0.25
TRIM28-212ENST00000597995 STX6O43752 255 aa13.51□□□□□ -0.25
TRIM28-212ENST00000597995 ATG13O75143 517 aa13.51□□□□□ -0.25
TRIM28-212ENST00000597995 HAPLN1P10915 354 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-212ENST00000597995 DDX6P26196 483 aaKnown RBP eCLIP13.51□□□□□ -0.25
TRIM28-212ENST00000597995 TAF6P49848 677 aa13.51□□□□□ -0.25
TRIM28-212ENST00000597995 CYP4F8P98187 520 aa13.51□□□□□ -0.25
TRIM28-212ENST00000597995 TNK2Q07912 1038 aa13.51□□□□□ -0.25
TRIM28-212ENST00000597995 TAF12Q16514 161 aa13.51□□□□□ -0.25
TRIM28-212ENST00000597995 PPM1JQ5JR12 505 aa13.51□□□□□ -0.25
TRIM28-212ENST00000597995 CMTM8Q8IZV2 173 aa13.51□□□□□ -0.25
TRIM28-212ENST00000597995 FAM83CQ9BQN1 747 aa13.51□□□□□ -0.25
TRIM28-212ENST00000597995 ST6GALNAC4Q9H4F1 302 aa13.51□□□□□ -0.25
TRIM28-212ENST00000597995 GKN1Q9NS71 199 aa13.51□□□□□ -0.25
TRIM28-212ENST00000597995 C2orf42Q9NWW7 574 aa13.51□□□□□ -0.25
TRIM28-212ENST00000597995 DPP3Q9NY33 737 aa13.51□□□□□ -0.25
TRIM28-212ENST00000597995 SCN1AP35498 2009 aa13.51□□□□□ -0.25
TRIM28-212ENST00000597995 TRDMT1O14717 391 aaKnown RBP13.5□□□□□ -0.25
TRIM28-212ENST00000597995 TBCAO75347 108 aaKnown RBP13.5□□□□□ -0.25
TRIM28-212ENST00000597995 KRT18P05783 430 aaKnown RBP13.5□□□□□ -0.25
TRIM28-212ENST00000597995 DDIT3P35638 169 aa13.5□□□□□ -0.25
TRIM28-212ENST00000597995 ACOT2P49753 483 aa13.5□□□□□ -0.25
TRIM28-212ENST00000597995 LIMK1P53667 647 aa13.5□□□□□ -0.25
TRIM28-212ENST00000597995 AMPD2Q01433 879 aa13.5□□□□□ -0.25
TRIM28-212ENST00000597995 GRSF1Q12849 480 aaKnown RBP eCLIP13.5□□□□□ -0.25
TRIM28-212ENST00000597995 RUNX3Q13761 415 aa13.5□□□□□ -0.25
TRIM28-212ENST00000597995 SLC39A14Q15043 492 aa13.5□□□□□ -0.25
TRIM28-212ENST00000597995 TMEM196Q5HYL7 178 aa13.5□□□□□ -0.25
TRIM28-212ENST00000597995 ADALQ6DHV7 355 aa13.5□□□□□ -0.25
TRIM28-212ENST00000597995 LRRTM3Q86VH5 581 aa13.5□□□□□ -0.25
TRIM28-212ENST00000597995 NT5DC4Q86YG4 428 aa13.5□□□□□ -0.25
TRIM28-212ENST00000597995 DCP1BQ8IZD4 617 aaKnown RBP13.5□□□□□ -0.25
TRIM28-212ENST00000597995 GIPC2Q8TF65 315 aa13.5□□□□□ -0.25
TRIM28-212ENST00000597995 GAB3Q8WWW8 586 aa13.5□□□□□ -0.25
TRIM28-212ENST00000597995 LARP4BQ92615 738 aaKnown RBP13.5□□□□□ -0.25
TRIM28-212ENST00000597995 PYM1Q9BRP8 204 aaKnown RBP13.5□□□□□ -0.25
TRIM28-212ENST00000597995 KIF9Q9HAQ2 790 aa13.5□□□□□ -0.25
TRIM28-212ENST00000597995 AGO2Q9UKV8 859 aaKnown RBP13.5□□□□□ -0.25
TRIM28-212ENST00000597995 MORC2Q9Y6X9 1032 aaPredicted RBP13.5□□□□□ -0.25
TRIM28-212ENST00000597995 ANK1P16157 1881 aa13.5□□□□□ -0.25
TRIM28-212ENST00000597995 KMT2BQ9UMN6 2715 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-212ENST00000597995 TSC2P49815 1807 aa13.49□□□□□ -0.25
TRIM28-212ENST00000597995 A0A087X0B3 334 aa13.49□□□□□ -0.25
TRIM28-212ENST00000597995 KPNA7A9QM74 516 aa13.49□□□□□ -0.25
TRIM28-212ENST00000597995 ANKRD63C9JTQ0 380 aa13.49□□□□□ -0.25
TRIM28-212ENST00000597995 EXTL3O43909 919 aa13.49□□□□□ -0.25
TRIM28-212ENST00000597995 GDF9O60383 454 aa13.49□□□□□ -0.25
TRIM28-212ENST00000597995 AKAP3O75969 853 aa13.49□□□□□ -0.25
TRIM28-212ENST00000597995 KRT37O76014 449 aa13.49□□□□□ -0.25
TRIM28-212ENST00000597995 F11P03951 625 aa13.49□□□□□ -0.25
TRIM28-212ENST00000597995 ZNF806P0C7X5 589 aa13.49□□□□□ -0.25
TRIM28-212ENST00000597995 HMGA1P17096 107 aaKnown RBP13.49□□□□□ -0.25
TRIM28-212ENST00000597995 NMT1P30419 496 aaKnown RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms