RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	GCNT3	O95395	438 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	FGF19	O95750	216 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	HAPLN1	P10915	354 aa	Predicted RBP	11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	POLR2B	P30876	1174 aa	Known RBP	11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	HOXC13	P31276	330 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	CXCL12	P48061	93 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	GPR15	P49685	360 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	TFAM	Q00059	246 aa	Known RBP	11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	SRSF5	Q13243	272 aa	Known RBP	11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	PPP2R5D	Q14738	602 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	SV2C	Q496J9	727 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	ARHGAP29	Q52LW3	1261 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	RRAGB	Q5VZM2	374 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	MAMSTR	Q6ZN01	415 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	THEM5	Q8N1Q8	247 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	SECISBP2L	Q93073	1101 aa	Known RBP	11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	HVCN1	Q96D96	273 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	DNAJC19	Q96DA6	116 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	MSANTD3	Q96H12	275 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	GCNA	Q96QF7	691 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	TASP1	Q9H6P5	420 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	C8orf33	Q9H7E9	229 aa	Predicted RBP	11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	PARD6A	Q9NPB6	346 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	TMLHE	Q9NVH6	421 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	C2orf42	Q9NWW7	574 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	CCDC39	Q9UFE4	941 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	USP18	Q9UMW8	372 aa		11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	SRPRB	Q9Y5M8	271 aa	Known RBP	11.36	□□□□□ -0.59
LSM4-205	ENST00000597776	NUP210	Q8TEM1	1887 aa	Predicted RBP	11.36	□□□□□ -0.59
LSM4-205	ENST00000597776		A0A087X0B3	334 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	GOLGA8IP	A6NC78	632 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	GOLGA8J	A6NMD2	632 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	CHURC1-FNTB	B4DL54	471 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	IL18RAP	O95256	599 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	ITGB3	P05106	788 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	IDE	P14735	1019 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	GAP43	P17677	238 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	TGM1	P22735	817 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	CDC25C	P30307	473 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	FNTB	P49356	437 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	NRL	P54845	237 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	MLLT6	P55198	1093 aa	Predicted RBP	11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	LRRC32	Q14392	662 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	POSTN	Q15063	836 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	PON2	Q15165	354 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	TAF12	Q16514	161 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	CCDC142	Q17RM4	750 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	L1TD1	Q5T7N2	865 aa	Known RBP	11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	SDHAF4	Q5VUM1	108 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	HEATR6	Q6AI08	1181 aa	Known RBP	11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	PRR23B	Q6ZRT6	265 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	SV2B	Q7L1I2	683 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	TMEM150A	Q86TG1	271 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	RALGPS2	Q86X27	583 aa	Predicted RBP	11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	BRSK2	Q8IWQ3	736 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	PDCL2	Q8N4E4	241 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	SPEM1	Q8N4L4	309 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	C1orf127	Q8N9H9	656 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	SPPL2B	Q8TCT7	592 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	BPIFB1	Q8TDL5	484 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	NOC3L	Q8WTT2	800 aa	Known RBP	11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	ZNF560	Q96MR9	790 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	ACCS	Q96QU6	501 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	PI4K2A	Q9BTU6	479 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	SLC46A2	Q9BY10	475 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	PANK2	Q9BZ23	570 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	OBP2A	Q9NY56	170 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	RBAK	Q9NYW8	714 aa	Predicted RBP	11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	SEL1L	Q9UBV2	794 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	AGAP1	Q9UPQ3	857 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	CCL26	Q9Y258	94 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776	TCHH	Q07283	1943 aa		11.35	□□□□□ -0.59
LSM4-205	ENST00000597776		K7ESF4	209 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	HCRT	O43612	131 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	HMGA1	P17096	107 aa	Known RBP	11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	PDC	P20941	246 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	SYT1	P21579	422 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	ACAT1	P24752	427 aa	Known RBP	11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	TXLNA	P40222	546 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	STAT6	P42226	847 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	NLRP12	P59046	1061 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	TSPY1	Q01534	308 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	POU5F1	Q01860	360 aa	Known RBP	11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	SPEM2	Q0P670	501 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	BFSP1	Q12934	665 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	C1orf228	Q6PIY5	440 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	DCP1B	Q8IZD4	617 aa	Known RBP	11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	SYCP3	Q8IZU3	236 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	CMTM8	Q8IZV2	173 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	MAB21L3	Q8N8X9	362 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	RIN3	Q8TB24	985 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	C2orf15	Q8WU43	125 aa	Known RBP	11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	CBWD1	Q9BRT8	395 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	PCIF1	Q9H4Z3	704 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	GKN1	Q9NS71	199 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	FOXD4L1	Q9NU39	408 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	GMEB2	Q9UKD1	530 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	RAB23	Q9ULC3	237 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	L1RE1	Q9UN81	338 aa		11.34	□□□□□ -0.59
LSM4-205	ENST00000597776	MAGED2	Q9UNF1	606 aa	Predicted RBP	11.34	□□□□□ -0.59

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