RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 SPTLC1O15269 473 aa21.06■□□□□ 0.96
TRIM47-204ENST00000587339 MYCP01106 439 aaPredicted RBP21.06■□□□□ 0.96
TRIM47-204ENST00000587339 THP07101 528 aa21.06■□□□□ 0.96
TRIM47-204ENST00000587339 LRPAP1P30533 357 aa21.06■□□□□ 0.96
TRIM47-204ENST00000587339 RNASE9P60153 205 aaKnown RBP21.06■□□□□ 0.96
TRIM47-204ENST00000587339 DSC3Q14574 896 aa21.06■□□□□ 0.96
TRIM47-204ENST00000587339 AGMOQ6ZNB7 445 aa21.06■□□□□ 0.96
TRIM47-204ENST00000587339 DPH6Q7L8W6 267 aa21.06■□□□□ 0.96
TRIM47-204ENST00000587339 UBL4BQ8N7F7 174 aa21.06■□□□□ 0.96
TRIM47-204ENST00000587339 PARD6BQ9BYG5 372 aa21.06■□□□□ 0.96
TRIM47-204ENST00000587339 O00370 1275 aa21.05■□□□□ 0.96
TRIM47-204ENST00000587339 DNM1LO00429 736 aa21.05■□□□□ 0.96
TRIM47-204ENST00000587339 FBXO38Q6PIJ6 1188 aa21.05■□□□□ 0.96
TRIM47-204ENST00000587339 OR6B3Q8NGW1 331 aa21.05■□□□□ 0.96
TRIM47-204ENST00000587339 ACTRT1Q8TDG2 376 aa21.05■□□□□ 0.96
TRIM47-204ENST00000587339 WNT8AQ9H1J5 351 aa21.05■□□□□ 0.96
TRIM47-204ENST00000587339 CARD9Q9H257 536 aa21.05■□□□□ 0.96
TRIM47-204ENST00000587339 MICAL2O94851 1124 aa21.04■□□□□ 0.96
TRIM47-204ENST00000587339 AFF1P51825 1210 aaKnown RBP21.04■□□□□ 0.96
TRIM47-204ENST00000587339 LILRA4P59901 499 aa21.04■□□□□ 0.96
TRIM47-204ENST00000587339 UNC93AQ86WB7 457 aa21.04■□□□□ 0.96
TRIM47-204ENST00000587339 RNF169Q8NCN4 708 aa21.04■□□□□ 0.96
TRIM47-204ENST00000587339 MSANTD4Q8NCY6 345 aa21.04■□□□□ 0.96
TRIM47-204ENST00000587339 APPL2Q8NEU8 664 aa21.04■□□□□ 0.96
TRIM47-204ENST00000587339 TRIM7Q9C029 511 aa21.04■□□□□ 0.96
TRIM47-204ENST00000587339 TSPYL2Q9H2G4 693 aaPredicted RBP21.04■□□□□ 0.96
TRIM47-204ENST00000587339 PAK6Q9NQU5 681 aaPredicted RBP21.04■□□□□ 0.96
TRIM47-204ENST00000587339 STRIP2Q9ULQ0 834 aa21.04■□□□□ 0.96
TRIM47-204ENST00000587339 M0QYV0 167 aa21.04■□□□□ 0.96
TRIM47-204ENST00000587339 PGRMC1O00264 195 aaKnown RBP21.04■□□□□ 0.96
TRIM47-204ENST00000587339 SKIP12755 728 aa21.04■□□□□ 0.96
TRIM47-204ENST00000587339 H2AFXP16104 143 aaPredicted RBP21.04■□□□□ 0.96
TRIM47-204ENST00000587339 TRAF7Q6Q0C0 670 aa21.04■□□□□ 0.96
TRIM47-204ENST00000587339 ACOT1Q86TX2 421 aa21.04■□□□□ 0.96
TRIM47-204ENST00000587339 MMGT1Q8N4V1 131 aa21.04■□□□□ 0.96
TRIM47-204ENST00000587339 C12orf29Q8N999 325 aa21.04■□□□□ 0.96
TRIM47-204ENST00000587339 CD101Q93033 1021 aa21.04■□□□□ 0.96
TRIM47-204ENST00000587339 DEFB118Q96PH6 123 aa21.04■□□□□ 0.96
TRIM47-204ENST00000587339 RBM12Q9NTZ6 932 aaKnown RBP21.04■□□□□ 0.96
TRIM47-204ENST00000587339 ARGLU1Q9NWB6 273 aaPredicted RBP21.04■□□□□ 0.96
TRIM47-204ENST00000587339 RNF216Q9NWF9 866 aaPredicted RBP21.04■□□□□ 0.96
TRIM47-204ENST00000587339 CCDC66A2RUB6 948 aa21.03■□□□□ 0.96
TRIM47-204ENST00000587339 A8MXQ7 604 aa21.03■□□□□ 0.96
TRIM47-204ENST00000587339 HUS1O60921 280 aa21.03■□□□□ 0.96
TRIM47-204ENST00000587339 IBSPP21815 317 aaPredicted RBP21.03■□□□□ 0.96
TRIM47-204ENST00000587339 STILQ15468 1287 aa21.03■□□□□ 0.96
TRIM47-204ENST00000587339 PTPN20Q4JDL3 420 aa21.03■□□□□ 0.96
TRIM47-204ENST00000587339 DCAF12L1Q5VU92 463 aa21.03■□□□□ 0.96
TRIM47-204ENST00000587339 CCDC70Q6NSX1 233 aa21.03■□□□□ 0.96
TRIM47-204ENST00000587339 LCLAT1Q6UWP7 414 aa21.03■□□□□ 0.96
TRIM47-204ENST00000587339 RASGEF1CQ8N431 466 aa21.03■□□□□ 0.96
TRIM47-204ENST00000587339 PDCL2Q8N4E4 241 aa21.03■□□□□ 0.96
TRIM47-204ENST00000587339 ALG3Q92685 438 aa21.03■□□□□ 0.96
TRIM47-204ENST00000587339 KRT35Q92764 455 aa21.03■□□□□ 0.96
TRIM47-204ENST00000587339 PGBD4Q96DM1 585 aa21.03■□□□□ 0.96
TRIM47-204ENST00000587339 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.03■□□□□ 0.966e-7■□□□□ 10.9
TRIM47-204ENST00000587339 SEZ6LQ9BYH1 1024 aa21.03■□□□□ 0.96
TRIM47-204ENST00000587339 RSAD1Q9HA92 442 aa21.03■□□□□ 0.96
TRIM47-204ENST00000587339 MIOSQ9NXC5 875 aa21.03■□□□□ 0.96
TRIM47-204ENST00000587339 CYTH4Q9UIA0 394 aa21.03■□□□□ 0.96
TRIM47-204ENST00000587339 TSPAN16Q9UKR8 245 aa21.03■□□□□ 0.96
TRIM47-204ENST00000587339 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.03■□□□□ 0.96
TRIM47-204ENST00000587339 SLC1A1P43005 524 aa21.02■□□□□ 0.96
TRIM47-204ENST00000587339 SCNN1GP51170 649 aa21.02■□□□□ 0.96
TRIM47-204ENST00000587339 MTFR1Q15390 333 aa21.02■□□□□ 0.96
TRIM47-204ENST00000587339 DNAJC24Q6P3W2 148 aa21.02■□□□□ 0.96
TRIM47-204ENST00000587339 FEZF2Q8TBJ5 459 aa21.02■□□□□ 0.96
TRIM47-204ENST00000587339 KBTBD7Q8WVZ9 684 aa21.02■□□□□ 0.96
TRIM47-204ENST00000587339 CTNNA1P35221 906 aaKnown RBP21.02■□□□□ 0.95
TRIM47-204ENST00000587339 GPD2P43304 727 aa21.02■□□□□ 0.95
TRIM47-204ENST00000587339 CDK7P50613 346 aa21.02■□□□□ 0.95
TRIM47-204ENST00000587339 MBTPS1Q14703 1052 aa21.02■□□□□ 0.95
TRIM47-204ENST00000587339 CYP4A22Q5TCH4 519 aa21.02■□□□□ 0.95
TRIM47-204ENST00000587339 CPNE8Q86YQ8 564 aa21.02■□□□□ 0.95
TRIM47-204ENST00000587339 RNPC3Q96LT9 517 aaKnown RBP21.02■□□□□ 0.95
TRIM47-204ENST00000587339 RNF208Q9H0X6 261 aa21.02■□□□□ 0.95
TRIM47-204ENST00000587339 SNX25Q9H3E2 840 aa21.02■□□□□ 0.95
TRIM47-204ENST00000587339 SYNCQ9H7C4 482 aa21.02■□□□□ 0.95
TRIM47-204ENST00000587339 UBN1Q9NPG3 1134 aa21.02■□□□□ 0.95
TRIM47-204ENST00000587339 L1RE1Q9UN81 338 aa21.02■□□□□ 0.95
TRIM47-204ENST00000587339 NME7Q9Y5B8 376 aa21.02■□□□□ 0.95
TRIM47-204ENST00000587339 PCDHA3Q9Y5H8 950 aa21.02■□□□□ 0.95
TRIM47-204ENST00000587339 PROSCO94903 275 aa21.01■□□□□ 0.95
TRIM47-204ENST00000587339 GNL1P36915 607 aaPredicted RBP21.01■□□□□ 0.95
TRIM47-204ENST00000587339 MARCKSL1P49006 195 aa21.01■□□□□ 0.95
TRIM47-204ENST00000587339 PEX5P50542 639 aa21.01■□□□□ 0.95
TRIM47-204ENST00000587339 LIMS2Q7Z4I7 341 aa21.01■□□□□ 0.95
TRIM47-204ENST00000587339 C3orf20Q8ND61 904 aa21.01■□□□□ 0.95
TRIM47-204ENST00000587339 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.01■□□□□ 0.95
TRIM47-204ENST00000587339 UBA3Q8TBC4 463 aa21.01■□□□□ 0.95
TRIM47-204ENST00000587339 C18orf8Q96DM3 657 aa21.01■□□□□ 0.95
TRIM47-204ENST00000587339 CPXM1Q96SM3 734 aa21.01■□□□□ 0.95
TRIM47-204ENST00000587339 PNKPQ96T60 521 aa21.01■□□□□ 0.95
TRIM47-204ENST00000587339 DNAI2Q9GZS0 605 aa21.01■□□□□ 0.95
TRIM47-204ENST00000587339 TTC7AQ9ULT0 858 aaPredicted RBP21.01■□□□□ 0.95
TRIM47-204ENST00000587339 TCRBV5S1A1TA0A578 114 aa21■□□□□ 0.95
TRIM47-204ENST00000587339 GJB6O95452 261 aa21■□□□□ 0.95
TRIM47-204ENST00000587339 TUBBP07437 444 aa21■□□□□ 0.95
TRIM47-204ENST00000587339 CTNNA2P26232 953 aa21■□□□□ 0.95
TRIM47-204ENST00000587339 CLCNKBP51801 687 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms