RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 CST3P01034 146 aaPredicted RBP11.66□□□□□ -0.54
CLIP3-203ENST00000586457 PDGFRBP09619 1106 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 ACAT1P24752 427 aaKnown RBP11.66□□□□□ -0.54
CLIP3-203ENST00000586457 CASP4P49662 377 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 CDR1P51861 262 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 UBE2HP62256 183 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 NCOA4Q13772 614 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 ZNF699Q32M78 642 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 ZNF667Q5HYK9 610 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 ISM2Q6H9L7 571 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 DNAJB7Q7Z6W7 309 aaPredicted RBP11.66□□□□□ -0.54
CLIP3-203ENST00000586457 SMYD4Q8IYR2 804 aaPredicted RBP11.66□□□□□ -0.54
CLIP3-203ENST00000586457 SLC44A3Q8N4M1 653 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 ENGASEQ8NFI3 743 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 OR10T2Q8NGX3 314 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 ITFG1Q8TB96 612 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 FEZF2Q8TBJ5 459 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 TMC2Q8TDI7 906 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 RSAD2Q8WXG1 361 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 BORCS6Q96GS4 357 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 TMEM209Q96SK2 561 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 PI4K2AQ9BTU6 479 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 MMRN2Q9H8L6 949 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 DMAC2Q9NW81 257 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 MAGEC2Q9UBF1 373 aaPredicted RBP11.66□□□□□ -0.54
CLIP3-203ENST00000586457 SIX4Q9UIU6 781 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 GTF3C4Q9UKN8 822 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 L1RE1Q9UN81 338 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 PCDHA5Q9Y5H7 936 aa11.66□□□□□ -0.54
CLIP3-203ENST00000586457 PTPRJQ12913 1337 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 LRRIQ3A6PVS8 624 aaPredicted RBP11.65□□□□□ -0.54
CLIP3-203ENST00000586457 A8MXQ7 604 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 DPYSL4O14531 572 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 MAPK13O15264 365 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 N4BP1O75113 896 aaKnown RBP11.65□□□□□ -0.54
CLIP3-203ENST00000586457 MICAL2O94851 1124 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 FAM163BP0C2L3 166 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 ANXA13P27216 316 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 PIK3CAP42336 1068 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 PRCPP42785 496 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 MYL6P60660 151 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 CYP27A1Q02318 531 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 NFIL3Q16649 462 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 SOWAHAQ2M3V2 549 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 EDRF1Q3B7T1 1238 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 TCERG1LQ5VWI1 586 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 SCN4BQ8IWT1 228 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 YAF2Q8IY57 180 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 ELOA2Q8IYF1 753 aaPredicted RBP11.65□□□□□ -0.54
CLIP3-203ENST00000586457 HS6ST3Q8IZP7 471 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 GIPC2Q8TF65 315 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 TMEM174Q8WUU8 243 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 FAM84AQ96KN4 292 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 ATXN3LQ9H3M9 355 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 ZFP14Q9HCL3 533 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 AVENQ9NQS1 362 aaPredicted RBP11.65□□□□□ -0.54
CLIP3-203ENST00000586457 CEP72Q9P209 647 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 CDH9Q9ULB4 789 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 MAGED2Q9UNF1 606 aaPredicted RBP11.65□□□□□ -0.54
CLIP3-203ENST00000586457 NUMBLQ9Y6R0 609 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 ANK1P16157 1881 aa11.65□□□□□ -0.54
CLIP3-203ENST00000586457 GOLGA6L22H0YM25 854 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 GADD45BO75293 160 aaPredicted RBP11.64□□□□□ -0.55
CLIP3-203ENST00000586457 SOAT2O75908 522 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 CFHP08603 1231 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 CSH1P0DML2 217 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 CSH2P0DML3 217 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 HAPLN1P10915 354 aaPredicted RBP11.64□□□□□ -0.55
CLIP3-203ENST00000586457 SRFP11831 508 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 GRIK1P39086 918 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 FKBP3Q00688 224 aaKnown RBP11.64□□□□□ -0.55
CLIP3-203ENST00000586457 PFKPQ01813 784 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 INTS6LQ5JSJ4 861 aaKnown RBP11.64□□□□□ -0.55
CLIP3-203ENST00000586457 PARM1Q6UWI2 310 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 HFE2Q6ZVN8 426 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 LRRTM3Q86VH5 581 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 NPAS3Q8IXF0 933 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 FBXL6Q8N531 539 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 FLCNQ8NFG4 579 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 ST13P5Q8NFI4 369 aaPredicted RBP11.64□□□□□ -0.55
CLIP3-203ENST00000586457 ZNF516Q92618 1163 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 TAF4BQ92750 862 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 ERCC4Q92889 916 aaPredicted RBP11.64□□□□□ -0.55
CLIP3-203ENST00000586457 PSMG2Q969U7 264 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 E2F7Q96AV8 911 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 DHTKD1Q96HY7 919 aaPredicted RBP11.64□□□□□ -0.55
CLIP3-203ENST00000586457 SHDQ96IW2 340 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 TNIP3Q96KP6 325 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 KXD1Q9BQD3 176 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 SYT15Q9BQS2 421 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 MED10Q9BTT4 135 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 ABCB6Q9NP58 842 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 EHD2Q9NZN4 543 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 DUSP12Q9UNI6 340 aa11.64□□□□□ -0.55
CLIP3-203ENST00000586457 ATP8B3O60423 1300 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 C2orf16Q68DN1 1984 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 A0A1W2PRU2 124 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 BICDL2A1A5D9 508 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 ANHXE9PGG2 379 aa11.63□□□□□ -0.55
CLIP3-203ENST00000586457 BIN1O00499 593 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms