RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 ALG8Q9BVK2 526 aa5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 SPC25Q9HBM1 224 aa5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 MAN1C1Q9NR34 630 aa5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 SIDT1Q9NXL6 827 aaKnown RBP5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 EHD3Q9NZN3 535 aa5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 CFAP97Q9P2B7 532 aa5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 RPLP2P05387 115 aaKnown RBP5.31□□□□□ -1.56
SMCHD1-208ENST00000583344 SMARCA1P28370 1054 aa5.31□□□□□ -1.56
SMCHD1-208ENST00000583344 CYP2C19P33261 490 aa5.31□□□□□ -1.56
SMCHD1-208ENST00000583344 PIK3CGP48736 1102 aa5.31□□□□□ -1.56
SMCHD1-208ENST00000583344 TOB1P50616 345 aaPredicted RBP5.31□□□□□ -1.56
SMCHD1-208ENST00000583344 GRM1Q13255 1194 aa5.31□□□□□ -1.56
SMCHD1-208ENST00000583344 FAM50AQ14320 339 aaKnown RBP5.31□□□□□ -1.56
SMCHD1-208ENST00000583344 EFCAB2Q5VUJ9 269 aa5.31□□□□□ -1.56
SMCHD1-208ENST00000583344 KIAA1614Q5VZ46 1190 aa5.31□□□□□ -1.56
SMCHD1-208ENST00000583344 SUMO4Q6EEV6 95 aa5.31□□□□□ -1.56
SMCHD1-208ENST00000583344 SEMA6DQ8NFY4 1073 aa5.31□□□□□ -1.56
SMCHD1-208ENST00000583344 GPR35Q9HC97 309 aa5.31□□□□□ -1.56
SMCHD1-208ENST00000583344 SERHLQ9NQF3 203 aa5.31□□□□□ -1.56
SMCHD1-208ENST00000583344 RLIMQ9NVW2 624 aa5.31□□□□□ -1.56
SMCHD1-208ENST00000583344 FLRT1Q9NZU1 646 aa5.31□□□□□ -1.56
SMCHD1-208ENST00000583344 PCDHA3Q9Y5H8 950 aa5.31□□□□□ -1.56
SMCHD1-208ENST00000583344 TOP2AP11388 1531 aaKnown RBP5.3□□□□□ -1.56
SMCHD1-208ENST00000583344 TARM1B6A8C7 271 aa5.3□□□□□ -1.56
SMCHD1-208ENST00000583344 CHEK2O96017 543 aa5.3□□□□□ -1.56
SMCHD1-208ENST00000583344 RARBP10826 455 aa5.3□□□□□ -1.56
SMCHD1-208ENST00000583344 JUPP14923 745 aa5.3□□□□□ -1.56
SMCHD1-208ENST00000583344 ITGALP20701 1170 aa5.3□□□□□ -1.56
SMCHD1-208ENST00000583344 PRDX5P30044 214 aa5.3□□□□□ -1.56
SMCHD1-208ENST00000583344 CD6P30203 668 aa5.3□□□□□ -1.56
SMCHD1-208ENST00000583344 ADKP55263 362 aaKnown RBP5.3□□□□□ -1.56
SMCHD1-208ENST00000583344 KRT85P78386 507 aa5.3□□□□□ -1.56
SMCHD1-208ENST00000583344 MTX3Q5HYI7 312 aa5.3□□□□□ -1.56
SMCHD1-208ENST00000583344 ZNF626Q68DY1 528 aa5.3□□□□□ -1.56
SMCHD1-208ENST00000583344 FAM90A1Q86YD7 464 aa5.3□□□□□ -1.56
SMCHD1-208ENST00000583344 KLHDC4Q8TBB5 520 aa5.3□□□□□ -1.56
SMCHD1-208ENST00000583344 TINAGL1Q9GZM7 467 aaPredicted RBP5.3□□□□□ -1.56
SMCHD1-208ENST00000583344 TMX1Q9H3N1 280 aa5.3□□□□□ -1.56
SMCHD1-208ENST00000583344 GNL3LQ9NVN8 582 aaKnown RBP5.3□□□□□ -1.56
SMCHD1-208ENST00000583344 CCDC88BA6NC98 1476 aa5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 PPM1DO15297 605 aa5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 TP73O15350 636 aa5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 ZRANB2O95218 330 aaKnown RBP eCLIP5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 PRR35P0CG20 571 aa5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 NHLRC4P0CG21 123 aaPredicted RBP5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 FXR1P51114 621 aaKnown RBP eCLIP5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 BMPR2Q13873 1038 aa5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 BOP1Q14137 746 aaKnown RBP5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 KIF22Q14807 665 aa5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 PTPN21Q16825 1174 aa5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 PLAC9Q5JTB6 97 aa5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 LCE1AQ5T7P2 110 aa5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 ZNF66Q6ZN08 573 aa5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 BHLHA9Q7RTU4 235 aa5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 ZNF551Q7Z340 670 aaPredicted RBP5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 FAM109AQ8N4B1 249 aa5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 ZNF366Q8N895 744 aa5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 C3orf20Q8ND61 904 aa5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 FAM136AQ96C01 138 aa5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 SERTAD4Q9NUC0 356 aa5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 SH3BP4Q9P0V3 963 aa5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 RAD54BQ9Y620 910 aa5.29□□□□□ -1.56
SMCHD1-208ENST00000583344 ZNF804BA4D1E1 1349 aa5.28□□□□□ -1.56
SMCHD1-208ENST00000583344 TNKSO95271 1327 aa5.28□□□□□ -1.56
SMCHD1-208ENST00000583344 M0QYG6 137 aa5.28□□□□□ -1.56
SMCHD1-208ENST00000583344 GCLCP48506 637 aaPredicted RBP5.28□□□□□ -1.56
SMCHD1-208ENST00000583344 EVA1CP58658 441 aa5.28□□□□□ -1.56
SMCHD1-208ENST00000583344 SSBP2P81877 361 aaPredicted RBP5.28□□□□□ -1.56
SMCHD1-208ENST00000583344 KLF9Q13886 244 aaPredicted RBP5.28□□□□□ -1.56
SMCHD1-208ENST00000583344 PPP1R32Q7Z5V6 425 aa5.28□□□□□ -1.56
SMCHD1-208ENST00000583344 Q8N9P0 234 aaPredicted RBP5.28□□□□□ -1.56
SMCHD1-208ENST00000583344 TNPO1Q92973 898 aaKnown RBP5.28□□□□□ -1.56
SMCHD1-208ENST00000583344 ARHGEF3Q9NR81 526 aa5.28□□□□□ -1.56
SMCHD1-208ENST00000583344 ABCF2Q9UG63 623 aa5.28□□□□□ -1.56
SMCHD1-208ENST00000583344 CEP162Q5TB80 1403 aa5.28□□□□□ -1.56
SMCHD1-208ENST00000583344 SOAT2O75908 522 aa5.27□□□□□ -1.57
SMCHD1-208ENST00000583344 LATS1O95835 1130 aa5.27□□□□□ -1.57
SMCHD1-208ENST00000583344 NDUFB7P17568 137 aa5.27□□□□□ -1.57
SMCHD1-208ENST00000583344 MPGP29372 298 aa5.27□□□□□ -1.57
SMCHD1-208ENST00000583344 TCF15Q12870 199 aa5.27□□□□□ -1.57
SMCHD1-208ENST00000583344 NOGQ13253 232 aa5.27□□□□□ -1.57
SMCHD1-208ENST00000583344 HEATR3Q7Z4Q2 680 aa5.27□□□□□ -1.57
SMCHD1-208ENST00000583344 USP37Q86T82 979 aa5.27□□□□□ -1.57
SMCHD1-208ENST00000583344 C9orf106Q8NAJ2 232 aa5.27□□□□□ -1.57
SMCHD1-208ENST00000583344 ATRIPQ8WXE1 791 aa5.27□□□□□ -1.57
SMCHD1-208ENST00000583344 REPS1Q96D71 796 aa5.27□□□□□ -1.57
SMCHD1-208ENST00000583344 SMARCA2P51531 1590 aa5.26□□□□□ -1.57
SMCHD1-208ENST00000583344 H0YIZ8 118 aa5.26□□□□□ -1.57
SMCHD1-208ENST00000583344 SMIM22K7EJ46 135 aa5.26□□□□□ -1.57
SMCHD1-208ENST00000583344 ZNF213O14771 459 aa5.26□□□□□ -1.57
SMCHD1-208ENST00000583344 NXPH3O95157 252 aa5.26□□□□□ -1.57
SMCHD1-208ENST00000583344 AHSGP02765 367 aa5.26□□□□□ -1.57
SMCHD1-208ENST00000583344 KELP23276 732 aa5.26□□□□□ -1.57
SMCHD1-208ENST00000583344 EPHB2P29323 1055 aa5.26□□□□□ -1.57
SMCHD1-208ENST00000583344 CLCN2P51788 898 aa5.26□□□□□ -1.57
SMCHD1-208ENST00000583344 ZNF134P52741 427 aa5.26□□□□□ -1.57
SMCHD1-208ENST00000583344 KRTAP10-9P60411 292 aa5.26□□□□□ -1.57
SMCHD1-208ENST00000583344 ETFDHQ16134 617 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms