RNA–Protein interactions for RNA: ENST00000580986.1

CCDC47-203, Transcript of coiled-coil domain containing 47, humanhuman

TSL 4

Gene CCDC47, Length 552 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-203ENST00000580986 RTP2Q5QGT7 225 aa11.11□□□□□ -0.63
CCDC47-203ENST00000580986 WSCD1Q658N2 575 aa11.11□□□□□ -0.63
CCDC47-203ENST00000580986 KIAA1841Q6NSI8 718 aa11.11□□□□□ -0.63
CCDC47-203ENST00000580986 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.11□□□□□ -0.63
CCDC47-203ENST00000580986 VSTM4Q8IW00 320 aa11.11□□□□□ -0.63
CCDC47-203ENST00000580986 ARHGEF19Q8IW93 802 aa11.11□□□□□ -0.63
CCDC47-203ENST00000580986 CRYBG2Q8N1P7 616 aa11.11□□□□□ -0.63
CCDC47-203ENST00000580986 THEM5Q8N1Q8 247 aa11.11□□□□□ -0.63
CCDC47-203ENST00000580986 LNX1Q8TBB1 728 aaPredicted RBP11.11□□□□□ -0.63
CCDC47-203ENST00000580986 POF1BQ8WVV4 589 aa11.11□□□□□ -0.63
CCDC47-203ENST00000580986 TNIP3Q96KP6 325 aa11.11□□□□□ -0.63
CCDC47-203ENST00000580986 KREMEN1Q96MU8 473 aa11.11□□□□□ -0.63
CCDC47-203ENST00000580986 LSM14BQ9BX40 385 aaKnown RBP11.11□□□□□ -0.63
CCDC47-203ENST00000580986 STK33Q9BYT3 514 aa11.11□□□□□ -0.63
CCDC47-203ENST00000580986 NUCKS1Q9H1E3 243 aaKnown RBP11.11□□□□□ -0.63
CCDC47-203ENST00000580986 SMYD3Q9H7B4 428 aa11.11□□□□□ -0.63
CCDC47-203ENST00000580986 GRPEL1Q9HAV7 217 aa11.11□□□□□ -0.63
CCDC47-203ENST00000580986 MRPL17Q9NRX2 175 aaKnown RBP11.11□□□□□ -0.63
CCDC47-203ENST00000580986 CISHQ9NSE2 258 aa11.11□□□□□ -0.63
CCDC47-203ENST00000580986 POLIQ9UNA4 740 aa11.11□□□□□ -0.63
CCDC47-203ENST00000580986 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.11□□□□□ -0.63
CCDC47-203ENST00000580986 ATG2AQ2TAZ0 1938 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 I3L4J1 428 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 GRM6O15303 877 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 LPXNO60711 386 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 PAEPP09466 180 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 ZNF75DP51815 510 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 ZNF132P52740 706 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 JAM2P57087 298 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 CAMK1Q14012 370 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 ARID5BQ14865 1188 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 MAPRE1Q15691 268 aaKnown RBP11.1□□□□□ -0.63
CCDC47-203ENST00000580986 PSMD5Q16401 504 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 MEA1Q16626 185 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 PTPROQ16827 1216 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 ZNF697Q5TEC3 545 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 RTL10Q7L3V2 364 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 TAS1R1Q7RTX1 841 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 SPRED2Q7Z698 418 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 MRPL43Q8N983 215 aaKnown RBP11.1□□□□□ -0.63
CCDC47-203ENST00000580986 ARNTL2Q8WYA1 636 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 MRPL38Q96DV4 380 aaKnown RBP11.1□□□□□ -0.63
CCDC47-203ENST00000580986 TCF25Q9BQ70 676 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 RTP3Q9BQQ7 232 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 NT5C1AQ9BXI3 368 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 SDCBP2Q9H190 292 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 SNX25Q9H3E2 840 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 ALG13Q9NP73 1137 aaKnown RBP11.1□□□□□ -0.63
CCDC47-203ENST00000580986 UBE2TQ9NPD8 197 aaPredicted RBP11.1□□□□□ -0.63
CCDC47-203ENST00000580986 FAM207AQ9NSI2 230 aaPredicted RBP11.1□□□□□ -0.63
CCDC47-203ENST00000580986 DDX43Q9NXZ2 648 aaKnown RBP11.1□□□□□ -0.63
CCDC47-203ENST00000580986 PLA2G2EQ9NZK7 142 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 HSFX1Q9UBD0 423 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 DNAJC12Q9UKB3 198 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 CDH9Q9ULB4 789 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 KIAA1257Q9ULG3 409 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 FHOD1Q9Y613 1164 aa11.1□□□□□ -0.63
CCDC47-203ENST00000580986 F8VZ95 297 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 WEE2P0C1S8 567 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 DNAJB1P25685 340 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 GNL1P36915 607 aaPredicted RBP11.09□□□□□ -0.63
CCDC47-203ENST00000580986 NDUFV1P49821 464 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 NDST1P52848 882 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 CDH8P55286 799 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 POLR2FP61218 127 aaKnown RBP11.09□□□□□ -0.63
CCDC47-203ENST00000580986 TSPY1Q01534 308 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 RAB33AQ14088 237 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 NFE2Q16621 373 aaPredicted RBP11.09□□□□□ -0.63
CCDC47-203ENST00000580986 CTXN3Q4LDR2 81 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 HABP4Q5JVS0 413 aaKnown RBP11.09□□□□□ -0.63
CCDC47-203ENST00000580986 TPGS2Q68CL5 300 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 IQCEQ6IPM2 695 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 FAM171BQ6P995 826 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 SCARA5Q6ZMJ2 495 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 TMC7Q7Z402 723 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 FAM71AQ8IYT1 594 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 WHAMMQ8TF30 809 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 C2orf15Q8WU43 125 aaKnown RBP11.09□□□□□ -0.63
CCDC47-203ENST00000580986 PTCD2Q8WV60 388 aaKnown RBP11.09□□□□□ -0.63
CCDC47-203ENST00000580986 RIN2Q8WYP3 895 aaPredicted RBP11.09□□□□□ -0.63
CCDC47-203ENST00000580986 SYN2Q92777 582 aaPredicted RBP11.09□□□□□ -0.63
CCDC47-203ENST00000580986 PPP2R3CQ969Q6 453 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 FUBP3Q96I24 572 aaKnown RBP eCLIP11.09□□□□□ -0.63
CCDC47-203ENST00000580986 CDCA3Q99618 268 aaPredicted RBP11.09□□□□□ -0.63
CCDC47-203ENST00000580986 PKMYT1Q99640 499 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 ARID3AQ99856 593 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 MRPL45Q9BRJ2 306 aaKnown RBP11.09□□□□□ -0.63
CCDC47-203ENST00000580986 EMILIN2Q9BXX0 1053 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 GPR88Q9GZN0 384 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 ZCWPW1Q9H0M4 648 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 TTYH1Q9H313 450 aaPredicted RBP11.09□□□□□ -0.63
CCDC47-203ENST00000580986 ENTPD7Q9NQZ7 604 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 MTUS1Q9ULD2 1270 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 CAPN11Q9UMQ6 739 aa11.09□□□□□ -0.63
CCDC47-203ENST00000580986 C2orf71A6NGG8 1288 aa11.08□□□□□ -0.64
CCDC47-203ENST00000580986 A8MXQ7 604 aa11.08□□□□□ -0.64
CCDC47-203ENST00000580986 SOX1O00570 391 aaPredicted RBP11.08□□□□□ -0.64
CCDC47-203ENST00000580986 EPHB6O15197 1021 aa11.08□□□□□ -0.64
CCDC47-203ENST00000580986 CLSTN1O94985 981 aa11.08□□□□□ -0.64
CCDC47-203ENST00000580986 GYPCP04921 128 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms