RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 CAGE1Q8TC20 777 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 COG1Q8WTW3 980 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 TRIM11Q96F44 468 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 TMEM176AQ96HP8 235 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 BTBD6Q96KE9 485 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 CALR3Q96L12 384 aaKnown RBP11.18□□□□□ -0.62
SS18-217ENST00000580958 TRAIPQ9BWF2 469 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 FAM124BQ9H5Z6 455 aaPredicted RBP11.18□□□□□ -0.62
SS18-217ENST00000580958 ABCB6Q9NP58 842 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 AVENQ9NQS1 362 aaPredicted RBP11.18□□□□□ -0.62
SS18-217ENST00000580958 ADAM22Q9P0K1 906 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 UVRAGQ9P2Y5 699 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 AMFRQ9UKV5 643 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 NME7Q9Y5B8 376 aa11.18□□□□□ -0.62
SS18-217ENST00000580958 FNDC1Q4ZHG4 1894 aaPredicted RBP11.17□□□□□ -0.62
SS18-217ENST00000580958 A0A0U1RQF3 1178 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 PDE2AO00408 941 aaPredicted RBP11.17□□□□□ -0.62
SS18-217ENST00000580958 MICAL2O94851 1124 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 THP07101 528 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 VDRP11473 427 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 SKIP12755 728 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 SELPP16109 830 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 RRM1P23921 792 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 CXCR5P32302 372 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 CDH5P33151 784 aaPredicted RBP11.17□□□□□ -0.62
SS18-217ENST00000580958 AFF1P51825 1210 aaKnown RBP11.17□□□□□ -0.62
SS18-217ENST00000580958 CKAP4Q07065 602 aaKnown RBP11.17□□□□□ -0.62
SS18-217ENST00000580958 PTP4A2Q12974 167 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 BFSP2Q13515 415 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 MESDQ14696 234 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 SGO2Q562F6 1265 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 TEX35Q5T0J7 233 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 C11orf63Q6NUN7 778 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 DPH6Q7L8W6 267 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 ECHDC2Q86YB7 292 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 WDTC1Q8N5D0 677 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 FBXO22Q8NEZ5 403 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 LINC01599Q8WXQ3 324 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 GOLGA1Q92805 767 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 PGBD4Q96DM1 585 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 VCPIP1Q96JH7 1222 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 HEXIM2Q96MH2 286 aaKnown RBP11.17□□□□□ -0.62
SS18-217ENST00000580958 NT5C1AQ9BXI3 368 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 RSAD1Q9HA92 442 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 SLC38A7Q9NVC3 462 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 GDAP2Q9NXN4 497 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 EHD2Q9NZN4 543 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 CACNG4Q9UBN1 327 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 CEP83Q9Y592 693 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 TTC3P53804 2025 aa11.17□□□□□ -0.62
SS18-217ENST00000580958 CTAGE15A4D2H0 777 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 EFCAB8A8MWE9 144 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 KPNA7A9QM74 516 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 M0QYV0 167 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 O00370 1275 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 PODXLO00592 558 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 HCRTO43612 131 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 PQBP1O60828 265 aaKnown RBP11.16□□□□□ -0.62
SS18-217ENST00000580958 CALB1P05937 261 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 CTAGE8P0CG41 777 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 FGFR1P11362 822 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 IGFBP6P24592 240 aaPredicted RBP11.16□□□□□ -0.62
SS18-217ENST00000580958 LILRA4P59901 499 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 ELF2Q15723 593 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 SOWAHAQ2M3V2 549 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 ERCC6LQ2NKX8 1250 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 RSRC2Q7L4I2 434 aaKnown RBP11.16□□□□□ -0.62
SS18-217ENST00000580958 CTU1Q7Z7A3 348 aaKnown RBP11.16□□□□□ -0.62
SS18-217ENST00000580958 ACOT1Q86TX2 421 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 CTAGE6Q86UF2 777 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 ZNF598Q86UK7 904 aaKnown RBP11.16□□□□□ -0.62
SS18-217ENST00000580958 RTN4RL1Q86UN2 441 aaPredicted RBP11.16□□□□□ -0.62
SS18-217ENST00000580958 OSTM1Q86WC4 334 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 CPNE8Q86YQ8 564 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 CREG2Q8IUH2 290 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 CTAGE4Q8IX94 777 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 OR6B3Q8NGW1 331 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 KBTBD7Q8WVZ9 684 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 ZNF518BQ9C0D4 1074 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 LHX5Q9H2C1 402 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 RGS18Q9NS28 235 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 SMARCAL1Q9NZC9 954 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 L1RE1Q9UN81 338 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.16□□□□□ -0.62
SS18-217ENST00000580958 INPP5FQ9Y2H2 1132 aa11.16□□□□□ -0.62
SS18-217ENST00000580958 PTPRDP23468 1912 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 KIAA0100Q14667 2235 aaKnown RBP11.15□□□□□ -0.62
SS18-217ENST00000580958 CASTOR2A6NHX0 329 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 A8MXQ7 604 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 C9IYK1 514 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 CYB561D2O14569 222 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 KCNK3O14649 394 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 DDX3YO15523 660 aaKnown RBP11.15□□□□□ -0.62
SS18-217ENST00000580958 HUS1O60921 280 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 NBNO60934 754 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 GJB6O95452 261 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 POMCP01189 267 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 HSPA8P11142 646 aaKnown RBP11.15□□□□□ -0.62
SS18-217ENST00000580958 MMP8P22894 467 aa11.15□□□□□ -0.62
SS18-217ENST00000580958 CLCNKBP51801 687 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms