RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 CCDC85CA6NKD9 419 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 ZNF263O14978 683 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 KRT86O43790 486 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 OAZ2O95190 189 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 H2AFZP0C0S5 128 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 SETSIPP0DME0 302 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 MYBL1P10243 752 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 BCAR1P56945 870 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 DEFB103AP81534 67 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 KIF5AQ12840 1032 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 MAPRE1Q15691 268 aaKnown RBP16.24■□□□□ 0.19
SS18-215ENST00000580642 CLEC16AQ2KHT3 1053 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 RASIP1Q5U651 963 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 WSCD1Q658N2 575 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 LCLAT1Q6UWP7 414 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 H2AFVQ71UI9 128 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 KIAA1328Q86T90 577 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 TMEM130Q8N3G9 435 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 TMEM35BQ8NCS4 154 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 SLC20A1Q8WUM9 679 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 UBE2Q2Q8WVN8 375 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.24■□□□□ 0.19
SS18-215ENST00000580642 MIS12Q9H081 205 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 CWH43Q9H720 699 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 DNAJB4Q9UDY4 337 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 REXO2Q9Y3B8 237 aaKnown RBP16.24■□□□□ 0.19
SS18-215ENST00000580642 SLC4A7Q9Y6M7 1214 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 COL4A6Q14031 1691 aa16.24■□□□□ 0.19
SS18-215ENST00000580642 TDRD15B5MCY1 1934 aaKnown RBP16.23■□□□□ 0.19
SS18-215ENST00000580642 SCN1AP35498 2009 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 A0A0A6YYK5 440 aaPredicted RBP16.23■□□□□ 0.19
SS18-215ENST00000580642 ANKRD62A6NC57 917 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 KIF2AO00139 706 aaPredicted RBP16.23■□□□□ 0.19
SS18-215ENST00000580642 O00370 1275 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 B4GALT3O60512 393 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 MMEP08473 750 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 UNGP13051 313 aaPredicted RBP16.23■□□□□ 0.19
SS18-215ENST00000580642 CD19P15391 556 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 PPM1AP35813 382 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 SLC11A1P49279 550 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 SNX16P57768 344 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 CENPCQ03188 943 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 BTG3Q14201 252 aaPredicted RBP16.23■□□□□ 0.19
SS18-215ENST00000580642 TCEAL1Q15170 157 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 ZNF394Q53GI3 561 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 ACAD10Q6JQN1 1059 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.23■□□□□ 0.19
SS18-215ENST00000580642 RNF10Q8N5U6 811 aaKnown RBP16.23■□□□□ 0.19
SS18-215ENST00000580642 B3GALNT2Q8NCR0 500 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 MSANTD4Q8NCY6 345 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 ACRBPQ8NEB7 543 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 STK32AQ8WU08 396 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 PPP1R13BQ96KQ4 1090 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 ZNF558Q96NG5 402 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 TWNKQ96RR1 684 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 YME1L1Q96TA2 773 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 RAD9AQ99638 391 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 DESI2Q9BSY9 194 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 DDX43Q9NXZ2 648 aaKnown RBP16.23■□□□□ 0.19
SS18-215ENST00000580642 MYO1AQ9UBC5 1043 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 PUF60Q9UHX1 559 aaKnown RBP16.23■□□□□ 0.19
SS18-215ENST00000580642 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.23■□□□□ 0.19
SS18-215ENST00000580642 ALPK3Q96L96 1907 aa16.23■□□□□ 0.19
SS18-215ENST00000580642 ZBBXA8MT70 800 aa16.22■□□□□ 0.19
SS18-215ENST00000580642 EFEMP2O95967 443 aa16.22■□□□□ 0.19
SS18-215ENST00000580642 TMEM253P0C7T8 217 aa16.22■□□□□ 0.19
SS18-215ENST00000580642 FGFR3P22607 806 aa16.22■□□□□ 0.19
SS18-215ENST00000580642 GATMP50440 423 aa16.22■□□□□ 0.19
SS18-215ENST00000580642 NOMO3P69849 1222 aa16.22■□□□□ 0.19
SS18-215ENST00000580642 CYP27A1Q02318 531 aa16.22■□□□□ 0.19
SS18-215ENST00000580642 YWHAHQ04917 246 aaPredicted RBP16.22■□□□□ 0.19
SS18-215ENST00000580642 SMARCB1Q12824 385 aa16.22■□□□□ 0.19
SS18-215ENST00000580642 ARHGAP29Q52LW3 1261 aa16.22■□□□□ 0.19
SS18-215ENST00000580642 TAF3Q5VWG9 929 aa16.22■□□□□ 0.19
SS18-215ENST00000580642 OVOS1Q6IE37 1185 aa16.22■□□□□ 0.19
SS18-215ENST00000580642 PHF13Q86YI8 300 aaPredicted RBP16.22■□□□□ 0.19
SS18-215ENST00000580642 REXO1L1PQ8IX06 675 aa16.22■□□□□ 0.19
SS18-215ENST00000580642 SP7Q8TDD2 431 aaPredicted RBP16.22■□□□□ 0.19
SS18-215ENST00000580642 TFAP2BQ92481 460 aa16.22■□□□□ 0.19
SS18-215ENST00000580642 NOX5Q96PH1 765 aa16.22■□□□□ 0.19
SS18-215ENST00000580642 HNRNPABQ99729 332 aaKnown RBP16.22■□□□□ 0.19
SS18-215ENST00000580642 ACP6Q9NPH0 428 aa16.22■□□□□ 0.19
SS18-215ENST00000580642 CYLDQ9NQC7 956 aa16.22■□□□□ 0.19
SS18-215ENST00000580642 SEPT11Q9NVA2 429 aaKnown RBP16.22■□□□□ 0.19
SS18-215ENST00000580642 MARCH5Q9NX47 278 aa16.22■□□□□ 0.19
SS18-215ENST00000580642 PRG3Q9Y2Y8 225 aaPredicted RBP16.22■□□□□ 0.19
SS18-215ENST00000580642 OR6C75A6NL08 312 aa16.21■□□□□ 0.19
SS18-215ENST00000580642 H7C4K7 107 aa16.21■□□□□ 0.19
SS18-215ENST00000580642 FTLP02792 175 aaPredicted RBP16.21■□□□□ 0.19
SS18-215ENST00000580642 PTPN1P18031 435 aaKnown RBP16.21■□□□□ 0.19
SS18-215ENST00000580642 BRD2P25440 801 aaKnown RBP16.21■□□□□ 0.19
SS18-215ENST00000580642 NSFP46459 744 aaKnown RBP16.21■□□□□ 0.19
SS18-215ENST00000580642 BRCC3P46736 316 aa16.21■□□□□ 0.19
SS18-215ENST00000580642 EPHB4P54760 987 aa16.21■□□□□ 0.19
SS18-215ENST00000580642 SLC8A3P57103 927 aa16.21■□□□□ 0.19
SS18-215ENST00000580642 TSPY1Q01534 308 aa16.21■□□□□ 0.19
SS18-215ENST00000580642 PLCB3Q01970 1234 aa16.21■□□□□ 0.19
SS18-215ENST00000580642 C1QBPQ07021 282 aaKnown RBP16.21■□□□□ 0.19
SS18-215ENST00000580642 MRPL58Q14197 206 aaKnown RBP16.21■□□□□ 0.19
SS18-215ENST00000580642 IFI16Q16666 785 aaKnown RBP16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms