RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ASB3Q9Y575 518 aa25.65■■□□□ 1.7
SHMT1-206ENST00000579558 CST3P01034 146 aaPredicted RBP25.64■■□□□ 1.7
SHMT1-206ENST00000579558 CFHP08603 1231 aa25.64■■□□□ 1.7
SHMT1-206ENST00000579558 ACAT1P24752 427 aaKnown RBP25.64■■□□□ 1.7
SHMT1-206ENST00000579558 LHX1P48742 406 aa25.64■■□□□ 1.7
SHMT1-206ENST00000579558 CEP135Q66GS9 1140 aa25.64■■□□□ 1.7
SHMT1-206ENST00000579558 DPH6Q7L8W6 267 aa25.64■■□□□ 1.7
SHMT1-206ENST00000579558 GUF1Q8N442 669 aaKnown RBP25.64■■□□□ 1.7
SHMT1-206ENST00000579558 PARD3BQ8TEW8 1205 aa25.64■■□□□ 1.7
SHMT1-206ENST00000579558 MFSD1Q9H3U5 465 aa25.64■■□□□ 1.7
SHMT1-206ENST00000579558 TMLHEQ9NVH6 421 aa25.64■■□□□ 1.7
SHMT1-206ENST00000579558 PCDHB5Q9Y5E4 795 aa25.64■■□□□ 1.7
SHMT1-206ENST00000579558 LRRIQ3A6PVS8 624 aaPredicted RBP25.63■■□□□ 1.69
SHMT1-206ENST00000579558 PHACTR2O75167 634 aa25.63■■□□□ 1.69
SHMT1-206ENST00000579558 PCSK1P29120 753 aa25.63■■□□□ 1.69
SHMT1-206ENST00000579558 TRPC3Q13507 836 aa25.63■■□□□ 1.69
SHMT1-206ENST00000579558 NFE2Q16621 373 aaPredicted RBP25.63■■□□□ 1.69
SHMT1-206ENST00000579558 INTS6LQ5JSJ4 861 aaKnown RBP25.63■■□□□ 1.69
SHMT1-206ENST00000579558 ITIH5Q86UX2 942 aa25.63■■□□□ 1.69
SHMT1-206ENST00000579558 FAM200AQ8TCP9 573 aa25.63■■□□□ 1.69
SHMT1-206ENST00000579558 FAM122AQ96E09 287 aa25.63■■□□□ 1.69
SHMT1-206ENST00000579558 MMS19Q96T76 1030 aa25.63■■□□□ 1.69
SHMT1-206ENST00000579558 KXD1Q9BQD3 176 aa25.63■■□□□ 1.69
SHMT1-206ENST00000579558 FRMD4BQ9Y2L6 1034 aa25.63■■□□□ 1.69
SHMT1-206ENST00000579558 ZNF318Q5VUA4 2279 aa25.63■■□□□ 1.69
SHMT1-206ENST00000579558 NRG2O14511 850 aaPredicted RBP25.62■■□□□ 1.69
SHMT1-206ENST00000579558 GABRDO14764 452 aa25.62■■□□□ 1.69
SHMT1-206ENST00000579558 MOSPD3O75425 235 aa25.62■■□□□ 1.69
SHMT1-206ENST00000579558 HAPLN1P10915 354 aaPredicted RBP25.62■■□□□ 1.69
SHMT1-206ENST00000579558 GJA1P17302 382 aa25.62■■□□□ 1.69
SHMT1-206ENST00000579558 AP3M2P53677 418 aa25.62■■□□□ 1.69
SHMT1-206ENST00000579558 BIRC3Q13489 604 aa25.62■■□□□ 1.69
SHMT1-206ENST00000579558 VEPH1Q14D04 833 aa25.62■■□□□ 1.69
SHMT1-206ENST00000579558 POTEHQ6S545 545 aa25.62■■□□□ 1.69
SHMT1-206ENST00000579558 LIMS2Q7Z4I7 341 aa25.62■■□□□ 1.69
SHMT1-206ENST00000579558 DNAJB7Q7Z6W7 309 aaPredicted RBP25.62■■□□□ 1.69
SHMT1-206ENST00000579558 TMC8Q8IU68 726 aa25.62■■□□□ 1.69
SHMT1-206ENST00000579558 PSMG2Q969U7 264 aa25.62■■□□□ 1.69
SHMT1-206ENST00000579558 LPIN3Q9BQK8 851 aa25.62■■□□□ 1.69
SHMT1-206ENST00000579558 LRRC3Q9BY71 257 aa25.62■■□□□ 1.69
SHMT1-206ENST00000579558 RMND1Q9NWS8 449 aa25.62■■□□□ 1.69
SHMT1-206ENST00000579558 WNT16Q9UBV4 365 aa25.62■■□□□ 1.69
SHMT1-206ENST00000579558 ARIH1Q9Y4X5 557 aaPredicted RBP25.62■■□□□ 1.69
SHMT1-206ENST00000579558 KMT2EQ8IZD2 1858 aa25.62■■□□□ 1.69
SHMT1-206ENST00000579558 HCRTO43612 131 aa25.61■■□□□ 1.69
SHMT1-206ENST00000579558 ATF6P18850 670 aa25.61■■□□□ 1.69
SHMT1-206ENST00000579558 NR2F2P24468 414 aa25.61■■□□□ 1.69
SHMT1-206ENST00000579558 VCPP55072 806 aaKnown RBP25.61■■□□□ 1.69
SHMT1-206ENST00000579558 MYL6P60660 151 aa25.61■■□□□ 1.69
SHMT1-206ENST00000579558 SIX5Q8N196 739 aa25.61■■□□□ 1.69
SHMT1-206ENST00000579558 SHKBP1Q8TBC3 707 aa25.61■■□□□ 1.69
SHMT1-206ENST00000579558 KBTBD7Q8WVZ9 684 aa25.61■■□□□ 1.69
SHMT1-206ENST00000579558 TIGD1Q96MW7 591 aa25.61■■□□□ 1.69
SHMT1-206ENST00000579558 PI4K2AQ9BTU6 479 aa25.61■■□□□ 1.69
SHMT1-206ENST00000579558 HOOK1Q9UJC3 728 aaKnown RBP25.61■■□□□ 1.69
SHMT1-206ENST00000579558 ZDBF2Q9HCK1 2354 aa25.6■■□□□ 1.69
SHMT1-206ENST00000579558 SMC2O95347 1197 aa25.6■■□□□ 1.69
SHMT1-206ENST00000579558 WARSP23381 471 aaKnown RBP25.6■■□□□ 1.69
SHMT1-206ENST00000579558 TNNC1P63316 161 aa25.6■■□□□ 1.69
SHMT1-206ENST00000579558 CLDN10P78369 228 aa25.6■■□□□ 1.69
SHMT1-206ENST00000579558 TEAD2Q15562 447 aa25.6■■□□□ 1.69
SHMT1-206ENST00000579558 NFIL3Q16649 462 aa25.6■■□□□ 1.69
SHMT1-206ENST00000579558 TDRD10Q5VZ19 366 aaKnown RBP25.6■■□□□ 1.69
SHMT1-206ENST00000579558 SMYD4Q8IYR2 804 aaPredicted RBP25.6■■□□□ 1.69
SHMT1-206ENST00000579558 TMC2Q8TDI7 906 aa25.6■■□□□ 1.69
SHMT1-206ENST00000579558 GPR152Q8TDT2 470 aa25.6■■□□□ 1.69
SHMT1-206ENST00000579558 GIPC2Q8TF65 315 aa25.6■■□□□ 1.69
SHMT1-206ENST00000579558 SYAP1Q96A49 352 aaPredicted RBP25.6■■□□□ 1.69
SHMT1-206ENST00000579558 PKMYT1Q99640 499 aa25.6■■□□□ 1.69
SHMT1-206ENST00000579558 ZNF334Q9HCZ1 680 aaPredicted RBP25.6■■□□□ 1.69
SHMT1-206ENST00000579558 SLC2A4RGQ9NR83 387 aa25.6■■□□□ 1.69
SHMT1-206ENST00000579558 GTF3C4Q9UKN8 822 aa25.6■■□□□ 1.69
SHMT1-206ENST00000579558 CA14Q9ULX7 337 aa25.6■■□□□ 1.69
SHMT1-206ENST00000579558 A0A1W2PRU2 124 aa25.59■■□□□ 1.69
SHMT1-206ENST00000579558 ECI2O75521 394 aa25.59■■□□□ 1.69
SHMT1-206ENST00000579558 CLSTN1O94985 981 aa25.59■■□□□ 1.69
SHMT1-206ENST00000579558 STAU1O95793 577 aaKnown RBP25.59■■□□□ 1.69
SHMT1-206ENST00000579558 AVPR2P30518 371 aa25.59■■□□□ 1.69
SHMT1-206ENST00000579558 ATICP31939 592 aa25.59■■□□□ 1.69
SHMT1-206ENST00000579558 GPC5P78333 572 aa25.59■■□□□ 1.69
SHMT1-206ENST00000579558 DLG4P78352 724 aa25.59■■□□□ 1.69
SHMT1-206ENST00000579558 TAF12Q16514 161 aa25.59■■□□□ 1.69
SHMT1-206ENST00000579558 WDR72Q3MJ13 1102 aa25.59■■□□□ 1.69
SHMT1-206ENST00000579558 FAM78AQ5JUQ0 283 aa25.59■■□□□ 1.69
SHMT1-206ENST00000579558 FLCNQ8NFG4 579 aa25.59■■□□□ 1.69
SHMT1-206ENST00000579558 GSDMAQ96QA5 445 aa25.59■■□□□ 1.69
SHMT1-206ENST00000579558 SYT15Q9BQS2 421 aa25.59■■□□□ 1.69
SHMT1-206ENST00000579558 KCNH6Q9H252 994 aa25.59■■□□□ 1.69
SHMT1-206ENST00000579558 SLITRK6Q9H5Y7 841 aa25.59■■□□□ 1.69
SHMT1-206ENST00000579558 FGF19O95750 216 aa25.58■■□□□ 1.69
SHMT1-206ENST00000579558 C4BPAP04003 597 aaKnown RBP25.58■■□□□ 1.69
SHMT1-206ENST00000579558 LMO2P25791 158 aa25.58■■□□□ 1.69
SHMT1-206ENST00000579558 RPL13P26373 211 aaKnown RBP25.58■■□□□ 1.69
SHMT1-206ENST00000579558 CCDC142Q17RM4 750 aa25.58■■□□□ 1.69
SHMT1-206ENST00000579558 TANGO2Q6ICL3 276 aa25.58■■□□□ 1.69
SHMT1-206ENST00000579558 SPATA2LQ8IUW3 424 aaPredicted RBP25.58■■□□□ 1.69
SHMT1-206ENST00000579558 ERCC4Q92889 916 aaPredicted RBP25.58■■□□□ 1.69
SHMT1-206ENST00000579558 SMARCE1Q969G3 411 aa25.58■■□□□ 1.69
SHMT1-206ENST00000579558 ELSPBP1Q96BH3 223 aa25.58■■□□□ 1.69
SHMT1-206ENST00000579558 ZSWIM3Q96MP5 696 aa25.58■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms