RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 DNAJC25Q9H1X3 360 aa14.78□□□□□ -0.04
CCDC40-216ENST00000576241 EPC1Q9H2F5 836 aa14.78□□□□□ -0.04
CCDC40-216ENST00000576241 PANK4Q9NVE7 773 aa14.78□□□□□ -0.04
CCDC40-216ENST00000576241 FBXO4Q9UKT5 387 aa14.78□□□□□ -0.04
CCDC40-216ENST00000576241 PATJQ8NI35 1801 aa14.78□□□□□ -0.04
CCDC40-216ENST00000576241 A0A087X0B3 334 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 KPNA7A9QM74 516 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 SOAT2O75908 522 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 GARTP22102 1010 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 KCNA4P22459 653 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 RPS9P46781 194 aaKnown RBP14.77□□□□□ -0.05
CCDC40-216ENST00000576241 NASPP49321 788 aaPredicted RBP14.77□□□□□ -0.05
CCDC40-216ENST00000576241 TFAMQ00059 246 aaKnown RBP14.77□□□□□ -0.05
CCDC40-216ENST00000576241 CSTF1Q05048 431 aaKnown RBP14.77□□□□□ -0.05
CCDC40-216ENST00000576241 SMARCB1Q12824 385 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 ARHGAP15Q53QZ3 475 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 WSCD1Q658N2 575 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 STXBP4Q6ZWJ1 553 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 DNAJB7Q7Z6W7 309 aaPredicted RBP14.77□□□□□ -0.05
CCDC40-216ENST00000576241 BRSK2Q8IWQ3 736 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 CCDC65Q8IXS2 484 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 PDILTQ8N807 584 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 ZBTB44Q8NCP5 570 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 C2orf15Q8WU43 125 aaKnown RBP14.77□□□□□ -0.05
CCDC40-216ENST00000576241 CACTINQ8WUQ7 758 aaKnown RBP14.77□□□□□ -0.05
CCDC40-216ENST00000576241 SAAL1Q96ER3 474 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 ZNF396Q96N95 335 aaPredicted RBP14.77□□□□□ -0.05
CCDC40-216ENST00000576241 GCNAQ96QF7 691 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 LRRC3Q9BY71 257 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 LRRC27Q9C0I9 530 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 ZCWPW1Q9H0M4 648 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 ATXN3LQ9H3M9 355 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 TMEM206Q9H813 350 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 ZNF334Q9HCZ1 680 aaPredicted RBP14.77□□□□□ -0.05
CCDC40-216ENST00000576241 TRPV5Q9NQA5 729 aa14.77□□□□□ -0.05
CCDC40-216ENST00000576241 RBAKQ9NYW8 714 aaPredicted RBP14.77□□□□□ -0.05
CCDC40-216ENST00000576241 NDRG2Q9UN36 371 aaKnown RBP14.77□□□□□ -0.05
CCDC40-216ENST00000576241 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.77□□□□□ -0.05
CCDC40-216ENST00000576241 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.76□□□□□ -0.05
CCDC40-216ENST00000576241 HEPACAM2A8MVW5 462 aa14.76□□□□□ -0.05
CCDC40-216ENST00000576241 DPYSL4O14531 572 aa14.76□□□□□ -0.05
CCDC40-216ENST00000576241 GABRR2P28476 465 aa14.76□□□□□ -0.05
CCDC40-216ENST00000576241 CASP5P51878 434 aa14.76□□□□□ -0.05
CCDC40-216ENST00000576241 TAF12Q16514 161 aa14.76□□□□□ -0.05
CCDC40-216ENST00000576241 MFSD6LQ8IWD5 586 aa14.76□□□□□ -0.05
CCDC40-216ENST00000576241 DCP1BQ8IZD4 617 aaKnown RBP14.76□□□□□ -0.05
CCDC40-216ENST00000576241 SPPL2BQ8TCT7 592 aa14.76□□□□□ -0.05
CCDC40-216ENST00000576241 NETO1Q8TDF5 533 aa14.76□□□□□ -0.05
CCDC40-216ENST00000576241 NOC3LQ8WTT2 800 aaKnown RBP14.76□□□□□ -0.05
CCDC40-216ENST00000576241 CLDN23Q96B33 292 aa14.76□□□□□ -0.05
CCDC40-216ENST00000576241 PIAS3Q9Y6X2 628 aa14.76□□□□□ -0.05
CCDC40-216ENST00000576241 COL4A3Q01955 1670 aa14.76□□□□□ -0.05
CCDC40-216ENST00000576241 ZZEF1O43149 2961 aa14.75□□□□□ -0.05
CCDC40-216ENST00000576241 FRMD3A2A2Y4 597 aa14.75□□□□□ -0.05
CCDC40-216ENST00000576241 EXTL3O43909 919 aa14.75□□□□□ -0.05
CCDC40-216ENST00000576241 LILRB5O75023 590 aa14.75□□□□□ -0.05
CCDC40-216ENST00000576241 ITGB3P05106 788 aa14.75□□□□□ -0.05
CCDC40-216ENST00000576241 PMLP29590 882 aa14.75□□□□□ -0.05
CCDC40-216ENST00000576241 POLR2BP30876 1174 aaKnown RBP14.75□□□□□ -0.05
CCDC40-216ENST00000576241 TSPY1Q01534 308 aa14.75□□□□□ -0.05
CCDC40-216ENST00000576241 SPEM2Q0P670 501 aa14.75□□□□□ -0.05
CCDC40-216ENST00000576241 GPR158Q5T848 1215 aa14.75□□□□□ -0.05
CCDC40-216ENST00000576241 GAREM2Q75VX8 874 aa14.75□□□□□ -0.05
CCDC40-216ENST00000576241 ARID3BQ8IVW6 561 aaPredicted RBP14.75□□□□□ -0.05
CCDC40-216ENST00000576241 LINC00301Q8NCQ3 95 aa14.75□□□□□ -0.05
CCDC40-216ENST00000576241 CSGALNACT1Q8TDX6 532 aa14.75□□□□□ -0.05
CCDC40-216ENST00000576241 FAM3CQ92520 227 aa14.75□□□□□ -0.05
CCDC40-216ENST00000576241 LPIN3Q9BQK8 851 aa14.75□□□□□ -0.05
CCDC40-216ENST00000576241 TNMDQ9H2S6 317 aa14.75□□□□□ -0.05
CCDC40-216ENST00000576241 CUEDC2Q9H467 287 aa14.75□□□□□ -0.05
CCDC40-216ENST00000576241 ZSCAN32Q9NX65 697 aa14.75□□□□□ -0.05
CCDC40-216ENST00000576241 ABI2Q9NYB9 513 aaPredicted RBP14.75□□□□□ -0.05
CCDC40-216ENST00000576241 GMEB2Q9UKD1 530 aa14.75□□□□□ -0.05
CCDC40-216ENST00000576241 ITGA11Q9UKX5 1188 aa14.75□□□□□ -0.05
CCDC40-216ENST00000576241 AGAP1Q9UPQ3 857 aa14.75□□□□□ -0.05
CCDC40-216ENST00000576241 R3HCC1Q9Y3T6 440 aaKnown RBP14.75□□□□□ -0.05
CCDC40-216ENST00000576241 GOLGA8IPA6NC78 632 aa14.74□□□□□ -0.05
CCDC40-216ENST00000576241 GOLGA8JA6NMD2 632 aa14.74□□□□□ -0.05
CCDC40-216ENST00000576241 KIAA0391O15091 583 aaKnown RBP14.74□□□□□ -0.05
CCDC40-216ENST00000576241 SPTLC2O15270 562 aa14.74□□□□□ -0.05
CCDC40-216ENST00000576241 CHADO15335 359 aa14.74□□□□□ -0.05
CCDC40-216ENST00000576241 HUS1O60921 280 aa14.74□□□□□ -0.05
CCDC40-216ENST00000576241 PPP6R2O75170 966 aa14.74□□□□□ -0.05
CCDC40-216ENST00000576241 PRPF6O94906 941 aaKnown RBP14.74□□□□□ -0.05
CCDC40-216ENST00000576241 HSP90AA1P07900 732 aaKnown RBP14.74□□□□□ -0.05
CCDC40-216ENST00000576241 ATF6P18850 670 aa14.74□□□□□ -0.05
CCDC40-216ENST00000576241 CDC25CP30307 473 aa14.74□□□□□ -0.05
CCDC40-216ENST00000576241 CDR1P51861 262 aa14.74□□□□□ -0.05
CCDC40-216ENST00000576241 AMPD3Q01432 767 aa14.74□□□□□ -0.05
CCDC40-216ENST00000576241 STXBP5Q5T5C0 1151 aa14.74□□□□□ -0.05
CCDC40-216ENST00000576241 C1orf228Q6PIY5 440 aa14.74□□□□□ -0.05
CCDC40-216ENST00000576241 LRRC52Q8N7C0 313 aa14.74□□□□□ -0.05
CCDC40-216ENST00000576241 C1orf127Q8N9H9 656 aa14.74□□□□□ -0.05
CCDC40-216ENST00000576241 MSANTD3Q96H12 275 aa14.74□□□□□ -0.05
CCDC40-216ENST00000576241 CBWD1Q9BRT8 395 aa14.74□□□□□ -0.05
CCDC40-216ENST00000576241 IER2Q9BTL4 223 aa14.74□□□□□ -0.05
CCDC40-216ENST00000576241 FGFBP2Q9BYJ0 223 aa14.74□□□□□ -0.05
CCDC40-216ENST00000576241 PCIF1Q9H4Z3 704 aa14.74□□□□□ -0.05
CCDC40-216ENST00000576241 PCDHB5Q9Y5E4 795 aa14.74□□□□□ -0.05
CCDC40-216ENST00000576241 SPEGQ15772 3267 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms