RNA–Protein interactions for RNA: ENST00000570273.5

HERPUD1-219, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 1,425 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-219ENST00000570273 AAASQ9NRG9 546 aa16.42■□□□□ 0.22
HERPUD1-219ENST00000570273 DDX43Q9NXZ2 648 aaKnown RBP16.42■□□□□ 0.22
HERPUD1-219ENST00000570273 PYCARDQ9ULZ3 195 aa16.42■□□□□ 0.22
HERPUD1-219ENST00000570273 STXBP5LQ9Y2K9 1186 aa16.42■□□□□ 0.22
HERPUD1-219ENST00000570273 NME7Q9Y5B8 376 aa16.42■□□□□ 0.22
HERPUD1-219ENST00000570273 GABRDO14764 452 aa16.41■□□□□ 0.22
HERPUD1-219ENST00000570273 TNFAIP3P21580 790 aa16.41■□□□□ 0.22
HERPUD1-219ENST00000570273 LMO2P25791 158 aa16.41■□□□□ 0.22
HERPUD1-219ENST00000570273 FAM171A1Q5VUB5 890 aa16.41■□□□□ 0.22
HERPUD1-219ENST00000570273 GLYCTKQ8IVS8 523 aa16.41■□□□□ 0.22
HERPUD1-219ENST00000570273 SP7Q8TDD2 431 aaPredicted RBP16.41■□□□□ 0.22
HERPUD1-219ENST00000570273 TMEM169Q96HH4 297 aa16.41■□□□□ 0.22
HERPUD1-219ENST00000570273 IGSF21Q96ID5 467 aa16.41■□□□□ 0.22
HERPUD1-219ENST00000570273 TNIP3Q96KP6 325 aa16.41■□□□□ 0.22
HERPUD1-219ENST00000570273 HEXIM2Q96MH2 286 aaKnown RBP16.41■□□□□ 0.22
HERPUD1-219ENST00000570273 SYT15Q9BQS2 421 aa16.41■□□□□ 0.22
HERPUD1-219ENST00000570273 SYT11Q9BT88 431 aa16.41■□□□□ 0.22
HERPUD1-219ENST00000570273 GPR62Q9BZJ7 368 aa16.41■□□□□ 0.22
HERPUD1-219ENST00000570273 PDCL3Q9H2J4 239 aa16.41■□□□□ 0.22
HERPUD1-219ENST00000570273 SPTLC3Q9NUV7 552 aa16.41■□□□□ 0.22
HERPUD1-219ENST00000570273 SPG21Q9NZD8 308 aa16.41■□□□□ 0.22
HERPUD1-219ENST00000570273 TSC2P49815 1807 aa16.41■□□□□ 0.22
HERPUD1-219ENST00000570273 LAMA3Q16787 3333 aa16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 NDUFA10O95299 355 aa16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 IPO7O95373 1038 aaKnown RBP16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 MMEP08473 750 aa16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 VDRP11473 427 aa16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 CHRNB2P17787 502 aa16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 ACAT1P24752 427 aaKnown RBP16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 PCSK1P29120 753 aa16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 PPM1AP35813 382 aa16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 RABGGTBP53611 331 aa16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 PSMC1P62191 440 aaKnown RBP16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 FMO1Q01740 532 aa16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 YWHAHQ04917 246 aaPredicted RBP16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 GFPT1Q06210 699 aaPredicted RBP16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 BMS1Q14692 1282 aaKnown RBP16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 ASTE1Q2TB18 679 aaPredicted RBP16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 SGO2Q562F6 1265 aa16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 TOGARAM2Q6ZUX3 1019 aa16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 CEP57Q86XR8 500 aa16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 THEM5Q8N1Q8 247 aa16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 LNX1Q8TBB1 728 aaPredicted RBP16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 TFAP2BQ92481 460 aa16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 DDX1Q92499 740 aaKnown RBP16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 DESI2Q9BSY9 194 aa16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 ADAMTS1Q9UHI8 967 aa16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 PCDHB12Q9Y5F1 795 aa16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 EPN1Q9Y6I3 576 aaPredicted RBP16.4■□□□□ 0.22
HERPUD1-219ENST00000570273 LCHNA4D1U4 455 aa16.39■□□□□ 0.21
HERPUD1-219ENST00000570273 DDX3XO00571 662 aaKnown RBP eCLIP16.39■□□□□ 0.213e-18■■■■□ 26.5
HERPUD1-219ENST00000570273 MED7O43513 233 aa16.39■□□□□ 0.21
HERPUD1-219ENST00000570273 FGFR3P22607 806 aa16.39■□□□□ 0.21
HERPUD1-219ENST00000570273 SSTR3P32745 418 aaPredicted RBP16.39■□□□□ 0.21
HERPUD1-219ENST00000570273 BMP8BP34820 402 aa16.39■□□□□ 0.21
HERPUD1-219ENST00000570273 SPA17Q15506 151 aa16.39■□□□□ 0.21
HERPUD1-219ENST00000570273 B3GALNT2Q8NCR0 500 aa16.39■□□□□ 0.21
HERPUD1-219ENST00000570273 ACRBPQ8NEB7 543 aa16.39■□□□□ 0.21
HERPUD1-219ENST00000570273 OLIG1Q8TAK6 271 aa16.39■□□□□ 0.21
HERPUD1-219ENST00000570273 ZNF606Q8WXB4 792 aa16.39■□□□□ 0.21
HERPUD1-219ENST00000570273 FAM49BQ9NUQ9 324 aa16.39■□□□□ 0.21
HERPUD1-219ENST00000570273 CDH9Q9ULB4 789 aa16.39■□□□□ 0.21
HERPUD1-219ENST00000570273 KIAA1257Q9ULG3 409 aa16.39■□□□□ 0.21
HERPUD1-219ENST00000570273 ZKSCAN5Q9Y2L8 839 aa16.39■□□□□ 0.21
HERPUD1-219ENST00000570273 A0A087X0T9 212 aa16.38■□□□□ 0.21
HERPUD1-219ENST00000570273 EIF3CLB5ME19 914 aaKnown RBP16.38■□□□□ 0.21
HERPUD1-219ENST00000570273 FAM228BP0C875 321 aa16.38■□□□□ 0.21
HERPUD1-219ENST00000570273 SLC18A3Q16572 532 aa16.38■□□□□ 0.21
HERPUD1-219ENST00000570273 VARS2Q5ST30 1063 aaKnown RBP16.38■□□□□ 0.21
HERPUD1-219ENST00000570273 FAM109BQ6ICB4 259 aaPredicted RBP16.38■□□□□ 0.21
HERPUD1-219ENST00000570273 ZNF280DQ6N043 979 aa16.38■□□□□ 0.21
HERPUD1-219ENST00000570273 PASD1Q8IV76 773 aa16.38■□□□□ 0.21
HERPUD1-219ENST00000570273 CRYBG2Q8N1P7 616 aa16.38■□□□□ 0.21
HERPUD1-219ENST00000570273 C12orf29Q8N999 325 aa16.38■□□□□ 0.21
HERPUD1-219ENST00000570273 CLP1Q92989 425 aaKnown RBP16.38■□□□□ 0.21
HERPUD1-219ENST00000570273 B3GALT6Q96L58 329 aa16.38■□□□□ 0.21
HERPUD1-219ENST00000570273 PCDHB18PQ96TA0 734 aa16.38■□□□□ 0.21
HERPUD1-219ENST00000570273 EIF3CQ99613 913 aaKnown RBP16.38■□□□□ 0.21
HERPUD1-219ENST00000570273 LPIN3Q9BQK8 851 aa16.38■□□□□ 0.21
HERPUD1-219ENST00000570273 RTP3Q9BQQ7 232 aa16.38■□□□□ 0.21
HERPUD1-219ENST00000570273 ZSWIM1Q9BR11 485 aa16.38■□□□□ 0.21
HERPUD1-219ENST00000570273 TTPALQ9BTX7 342 aa16.38■□□□□ 0.21
HERPUD1-219ENST00000570273 HERC2P3Q9BVR0 1158 aa16.38■□□□□ 0.21
HERPUD1-219ENST00000570273 GRXCR1A8MXD5 290 aa16.37■□□□□ 0.21
HERPUD1-219ENST00000570273 M0QYV0 167 aa16.37■□□□□ 0.21
HERPUD1-219ENST00000570273 O00370 1275 aa16.37■□□□□ 0.21
HERPUD1-219ENST00000570273 ATP2C2O75185 946 aa16.37■□□□□ 0.21
HERPUD1-219ENST00000570273 CCDC130P13994 396 aa16.37■□□□□ 0.21
HERPUD1-219ENST00000570273 PTPN1P18031 435 aaKnown RBP16.37■□□□□ 0.21
HERPUD1-219ENST00000570273 CTNNB1P35222 781 aa16.37■□□□□ 0.21
HERPUD1-219ENST00000570273 TSPY1Q01534 308 aa16.37■□□□□ 0.21
HERPUD1-219ENST00000570273 CYP27A1Q02318 531 aa16.37■□□□□ 0.21
HERPUD1-219ENST00000570273 STILQ15468 1287 aa16.37■□□□□ 0.21
HERPUD1-219ENST00000570273 GOLGA7BQ2TAP0 167 aa16.37■□□□□ 0.21
HERPUD1-219ENST00000570273 USP41Q3LFD5 358 aa16.37■□□□□ 0.21
HERPUD1-219ENST00000570273 MDH1BQ5I0G3 518 aa16.37■□□□□ 0.21
HERPUD1-219ENST00000570273 INTS6LQ5JSJ4 861 aaKnown RBP16.37■□□□□ 0.21
HERPUD1-219ENST00000570273 CCDC122Q5T0U0 273 aa16.37■□□□□ 0.21
HERPUD1-219ENST00000570273 TRIM72Q6ZMU5 477 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms