RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 AP1ARQ63HQ0 302 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 DARS2Q6PI48 645 aaKnown RBP15.24■□□□□ 0.03
VPS35-210ENST00000568784 MAP4K3Q8IVH8 894 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 DDX1Q92499 740 aaKnown RBP15.24■□□□□ 0.03
VPS35-210ENST00000568784 SHCBP1LQ9BZQ2 653 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 SLC9A2Q9UBY0 812 aa15.24■□□□□ 0.03
VPS35-210ENST00000568784 H3BRJ5 948 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 LIASO43766 372 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 ENTPD3O75355 529 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 SRGAP2CP0DJJ0 459 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 GEMIN4P57678 1058 aaKnown RBP15.23■□□□□ 0.03
VPS35-210ENST00000568784 THOC5Q13769 683 aaKnown RBP15.23■□□□□ 0.03
VPS35-210ENST00000568784 NCOA4Q13772 614 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 TDRD10Q5VZ19 366 aaKnown RBP15.23■□□□□ 0.03
VPS35-210ENST00000568784 GPAT2Q6NUI2 795 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 DSTYKQ6XUX3 929 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 SPOCD1Q6ZMY3 1216 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 RCOR2Q8IZ40 523 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 KCTD17Q8N5Z5 321 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 EXD1Q8NHP7 514 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 FBXO41Q8TF61 875 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 PPP1R16BQ96T49 567 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 STARD13Q9Y3M8 1113 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 DPPA5A6NC42 116 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 TXNDC9O14530 226 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 PSTPIP1O43586 416 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 PDK4Q16654 411 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 ABRAQ8N0Z2 381 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 SLC25A41Q8N5S1 370 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 RANBP17Q9H2T7 1088 aaKnown RBP15.23■□□□□ 0.03
VPS35-210ENST00000568784 SMYD3Q9H7B4 428 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 ZNF70Q9UC06 446 aaPredicted RBP15.23■□□□□ 0.03
VPS35-210ENST00000568784 XPO7Q9UIA9 1087 aaKnown RBP15.23■□□□□ 0.03
VPS35-210ENST00000568784 MYPNQ86TC9 1320 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 TP73O15350 636 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 ZCCHC18P0CG32 403 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 JAK3P52333 1124 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 PRKCEQ02156 737 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 ANKRD22Q5VYY1 191 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 ENOSF1Q7L5Y1 443 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 ZNF606Q8WXB4 792 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 PPP1R1BQ9UD71 204 aaPredicted RBP15.23■□□□□ 0.03
VPS35-210ENST00000568784 HEY1Q9Y5J3 304 aa15.23■□□□□ 0.03
VPS35-210ENST00000568784 TNRC6CQ9HCJ0 1690 aaKnown RBP15.23■□□□□ 0.03
VPS35-210ENST00000568784 EME2A4GXA9 379 aaPredicted RBP15.22■□□□□ 0.03
VPS35-210ENST00000568784 PEX11AO75192 247 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 UNGP13051 313 aaPredicted RBP15.22■□□□□ 0.03
VPS35-210ENST00000568784 PGM1P36871 562 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 KRT76Q01546 638 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 KHDC1Q4VXA5 237 aaKnown RBP15.22■□□□□ 0.03
VPS35-210ENST00000568784 CASC4Q6P4E1 433 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 TTC7BQ86TV6 843 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 OR5B17Q8NGF7 314 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 ZNF516Q92618 1163 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 ARL8BQ9NVJ2 186 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 FBXO40Q9UH90 709 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 GRID1Q9ULK0 1009 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 TELO2Q9Y4R8 837 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 ABCA3Q99758 1704 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 GRAP2O75791 330 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 PTPN4P29074 926 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 GCNT1Q02742 428 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 PTK7Q13308 1070 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 SNX30Q5VWJ9 437 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 C1orf228Q6PIY5 440 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 TEKT4Q8WW24 435 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 DDX50Q9BQ39 737 aaKnown RBP15.22■□□□□ 0.03
VPS35-210ENST00000568784 RNF146Q9NTX7 359 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 SCOCQ9UIL1 159 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 B2RBV5 119 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 CIB2O75838 187 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 ICAM1P05362 532 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 MYL2P10916 166 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 SKIP12755 728 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 GLRA2P23416 452 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 CAP2P40123 477 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 NOMO3P69849 1222 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 SLC27A3Q5K4L6 730 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 TMEM63BQ5T3F8 832 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 RASIP1Q5U651 963 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 SLC39A4Q6P5W5 647 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 TMEM35BQ8NCS4 154 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 CCDC124Q96CT7 223 aaKnown RBP15.22■□□□□ 0.03
VPS35-210ENST00000568784 TMEM120AQ9BXJ8 343 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 CPSF2Q9P2I0 782 aaKnown RBP15.22■□□□□ 0.03
VPS35-210ENST00000568784 PRKAG3Q9UGI9 489 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 NUB1Q9Y5A7 615 aa15.22■□□□□ 0.03
VPS35-210ENST00000568784 COPEO14579 308 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 CCDC22O60826 627 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 TPBGLP0DKB5 382 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 PYGBP11216 843 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 GNAT1P11488 350 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 GM2AP17900 193 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 ABL2P42684 1182 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 ALDH18A1P54886 795 aaKnown RBP15.21■□□□□ 0.03
VPS35-210ENST00000568784 RIBC1Q8N443 379 aaPredicted RBP15.21■□□□□ 0.03
VPS35-210ENST00000568784 MAB21L3Q8N8X9 362 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 TMC2Q8TDI7 906 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 C7orf43Q8WVR3 580 aa15.21■□□□□ 0.03
VPS35-210ENST00000568784 GBP5Q96PP8 586 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms