RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 ERCC6Q03468 1493 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 TONSLQ96HA7 1378 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 MYPNQ86TC9 1320 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 TARSL2A2RTX5 802 aaKnown RBP3.54□□□□□ -1.84
VPS35-208ENST00000568612 C2orf78A6NCI8 922 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 CAPN14A8MX76 684 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 TTC34A8MYJ7 566 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 ELL2O00472 640 aaPredicted RBP3.54□□□□□ -1.84
VPS35-208ENST00000568612 NDUFAB1O14561 156 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 BIRC5O15392 142 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 DIAPH2O60879 1101 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 OPHN1O60890 802 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 MAFO75444 373 aaPredicted RBP3.54□□□□□ -1.84
VPS35-208ENST00000568612 TOX4O94842 621 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 ADCY5O95622 1261 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 CYP1A2P05177 515 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 PARP1P09874 1014 aaKnown RBP3.54□□□□□ -1.84
VPS35-208ENST00000568612 CLEC2LP0C7M8 214 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 CCDC166P0CW27 439 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 RBP3P10745 1247 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 GNAT2P19087 354 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 SYT1P21579 422 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 RRM1P23921 792 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 PSMA3P25788 255 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 SOX5P35711 763 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 PSMC4P43686 418 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 FNTAP49354 379 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 GNAQP50148 359 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 HGFACQ04756 655 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 DMPKQ09013 629 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 FOXL1Q12952 345 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 MAPRE1Q15691 268 aaKnown RBP3.54□□□□□ -1.84
VPS35-208ENST00000568612 NRN1LQ496H8 165 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 CCDC14Q49A88 953 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 PABPC1LQ4VXU2 614 aaKnown RBP3.54□□□□□ -1.84
VPS35-208ENST00000568612 CCDC158Q5M9N0 1113 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 SPDYAQ5MJ70 313 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 SH2D4BQ5SQS7 431 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 ZBTB41Q5SVQ8 909 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 BROXQ5VW32 411 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 FRMD7Q6ZUT3 714 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 GAREM2Q75VX8 874 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 KANSL1Q7Z3B3 1105 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 LURAP1LQ8IV03 231 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 CCDC146Q8IYE0 955 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 GPR135Q8IZ08 494 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 D2HGDHQ8N465 521 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3.54□□□□□ -1.84
VPS35-208ENST00000568612 LINC00469Q8N7U9 141 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 CDYL2Q8N8U2 506 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 SYT2Q8N9I0 419 aaPredicted RBP3.54□□□□□ -1.84
VPS35-208ENST00000568612 ZNF610Q8N9Z0 462 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 CCDC110Q8TBZ0 833 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 TRPC4APQ8TEL6 797 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 CHAC2Q8WUX2 184 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 ZFPM2Q8WW38 1151 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 ATRIPQ8WXE1 791 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 USP6NLQ92738 828 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 SLC5A5Q92911 643 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 ARL8AQ96BM9 186 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 FAM89AQ96GI7 184 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 ZNF496Q96IT1 587 aaPredicted RBP3.54□□□□□ -1.84
VPS35-208ENST00000568612 EPSTI1Q96J88 318 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 C16orf45Q96MC5 204 aaPredicted RBP3.54□□□□□ -1.84
VPS35-208ENST00000568612 UROC1Q96N76 676 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 WWC2-AS2Q96NR7 200 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 TSC22D3Q99576 134 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 TTC1Q99614 292 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 C1QTNF3Q9BXJ4 246 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 KRTAP3-1Q9BYR8 98 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 EPC1Q9H2F5 836 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 SLC6A15Q9H2J7 730 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 BHMT2Q9H2M3 363 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 NELFAQ9H3P2 528 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 IFT22Q9H7X7 185 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 CAAP1Q9H8G2 361 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 PAPOLBQ9NRJ5 636 aaKnown RBP3.54□□□□□ -1.84
VPS35-208ENST00000568612 IL20Q9NYY1 176 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 USP36Q9P275 1121 aaKnown RBP3.54□□□□□ -1.84
VPS35-208ENST00000568612 ATXN10Q9UBB4 475 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 HESX1Q9UBX0 185 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 ZNF148Q9UQR1 794 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 MYRFQ9Y2G1 1151 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 TSC22D4Q9Y3Q8 395 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 PCDHB6Q9Y5E3 794 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 HECW1Q76N89 1606 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 ABCC8Q09428 1581 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 DISP1Q96F81 1524 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 SHANK2Q9UPX8 1470 aa3.54□□□□□ -1.84
VPS35-208ENST00000568612 RTL1A6NKG5 1358 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 ABCC11Q96J66 1382 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 SH3TC1Q8TE82 1336 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 A0A0A6YYJ9 748 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 UBE2QL1A1L167 161 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 SYCE3A1L190 88 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 PRSS38A1L453 326 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 FRMD3A2A2Y4 597 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 CCDC162PA2VCL2 907 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 C19orf81C9J6K1 198 aa3.53□□□□□ -1.84
VPS35-208ENST00000568612 H3BQF6 201 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms