RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	SMG5	Q9UPR3	1016 aa	Known RBP	18.18	■□□□□ 0.5
CLN3-231	ENST00000568422	ZNF638	Q14966	1978 aa	Known RBP	18.17	■□□□□ 0.5
CLN3-231	ENST00000568422	MYMK	A6NI61	221 aa		18.17	■□□□□ 0.5
CLN3-231	ENST00000568422	HAPLN1	P10915	354 aa	Predicted RBP	18.17	■□□□□ 0.5
CLN3-231	ENST00000568422	TDGF1	P13385	188 aa		18.17	■□□□□ 0.5
CLN3-231	ENST00000568422	ATF6	P18850	670 aa		18.17	■□□□□ 0.5
CLN3-231	ENST00000568422	SYT1	P21579	422 aa		18.17	■□□□□ 0.5
CLN3-231	ENST00000568422	GART	P22102	1010 aa		18.17	■□□□□ 0.5
CLN3-231	ENST00000568422	CXCL12	P48061	93 aa		18.17	■□□□□ 0.5
CLN3-231	ENST00000568422	WSCD1	Q658N2	575 aa		18.17	■□□□□ 0.5
CLN3-231	ENST00000568422	SPEM1	Q8N4L4	309 aa		18.17	■□□□□ 0.5
CLN3-231	ENST00000568422	CELF5	Q8N6W0	485 aa	Known RBP	18.17	■□□□□ 0.5
CLN3-231	ENST00000568422	LPIN3	Q9BQK8	851 aa		18.17	■□□□□ 0.5
CLN3-231	ENST00000568422	FAM213A	Q9BRX8	229 aa		18.17	■□□□□ 0.5
CLN3-231	ENST00000568422	THG1L	Q9NWX6	298 aa	Known RBP	18.17	■□□□□ 0.5
CLN3-231	ENST00000568422	DNAH14	Q0VDD8	3507 aa		18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	KIF26A	Q9ULI4	1882 aa	Predicted RBP	18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	MYBPHL	A2RUH7	354 aa		18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	SLC38A8	A6NNN8	435 aa		18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	SOBP	A7XYQ1	873 aa		18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	GCNT3	O95395	438 aa		18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	TSPY1	Q01534	308 aa		18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	REST	Q13127	1097 aa		18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	NFE2	Q16621	373 aa	Predicted RBP	18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	DGKK	Q5KSL6	1271 aa		18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	DGLUCY	Q7Z3D6	616 aa		18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	LRRTM3	Q86VH5	581 aa		18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	BRSK2	Q8IWQ3	736 aa		18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	SYCP3	Q8IZU3	236 aa		18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	BPIFB1	Q8TDL5	484 aa		18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	INTS4	Q96HW7	963 aa	Known RBP	18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	CLIC6	Q96NY7	704 aa		18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	IL21	Q9HBE4	155 aa		18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	DLL3	Q9NYJ7	618 aa		18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	PCDHB5	Q9Y5E4	795 aa		18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	OBSL1	O75147	1896 aa		18.16	■□□□□ 0.5
CLN3-231	ENST00000568422	FRMD3	A2A2Y4	597 aa		18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	SPECC1L-ADORA2A	F8WAN1	911 aa		18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	PAPSS2	O95340	614 aa	Predicted RBP	18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	DDX6	P26196	483 aa	Known RBP eCLIP	18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	CTH	P32929	405 aa		18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	STAT6	P42226	847 aa		18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	TFAM	Q00059	246 aa	Known RBP	18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	KCNA1	Q09470	495 aa		18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	SLC39A14	Q15043	492 aa		18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	TMEM86A	Q8N2M4	240 aa		18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	SYNPO	Q8N3V7	929 aa		18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	LRRC52	Q8N7C0	313 aa		18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	SPATA18	Q8TC71	538 aa		18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	LEO1	Q8WVC0	666 aa	Predicted RBP	18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	LRRC3B	Q96PB8	259 aa		18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	ACBD6	Q9BR61	282 aa		18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	IKZF4	Q9H2S9	585 aa		18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	TMEM206	Q9H813	350 aa		18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	ABI2	Q9NYB9	513 aa	Predicted RBP	18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	RBAK	Q9NYW8	714 aa	Predicted RBP	18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	TBC1D7	Q9P0N9	293 aa		18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	GMEB2	Q9UKD1	530 aa		18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	ITGA11	Q9UKX5	1188 aa		18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	RAB23	Q9ULC3	237 aa		18.15	■□□□□ 0.5
CLN3-231	ENST00000568422	KIAA0391	O15091	583 aa	Known RBP	18.14	■□□□□ 0.49
CLN3-231	ENST00000568422	EXTL3	O43909	919 aa		18.14	■□□□□ 0.49
CLN3-231	ENST00000568422	HUS1	O60921	280 aa		18.14	■□□□□ 0.49
CLN3-231	ENST00000568422	IDE	P14735	1019 aa		18.14	■□□□□ 0.49
CLN3-231	ENST00000568422	GPIHBP1	Q8IV16	184 aa		18.14	■□□□□ 0.49
CLN3-231	ENST00000568422	CMTM8	Q8IZV2	173 aa		18.14	■□□□□ 0.49
CLN3-231	ENST00000568422	PDCL2	Q8N4E4	241 aa		18.14	■□□□□ 0.49
CLN3-231	ENST00000568422	GIPC2	Q8TF65	315 aa		18.14	■□□□□ 0.49
CLN3-231	ENST00000568422	ABCB6	Q9NP58	842 aa		18.14	■□□□□ 0.49
CLN3-231	ENST00000568422	PANK4	Q9NVE7	773 aa		18.14	■□□□□ 0.49
CLN3-231	ENST00000568422	GTSE1	Q9NYZ3	720 aa		18.14	■□□□□ 0.49
CLN3-231	ENST00000568422	AGAP1	Q9UPQ3	857 aa		18.14	■□□□□ 0.49
CLN3-231	ENST00000568422	PRR5-ARHGAP8	B1AHC4	643 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	PRAMEF12	O95522	483 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	ITGB3	P05106	788 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	CSH1	P0DML2	217 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	CSH2	P0DML3	217 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	POLR2B	P30876	1174 aa	Known RBP	18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	CNR2	P34972	360 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	AVPR1A	P37288	418 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	SOX9	P48436	509 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	CASP5	P51878	434 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	NLRP12	P59046	1061 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	ARHGAP8	P85298	464 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	CYP4F8	P98187	520 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	MYL7	Q01449	175 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	LMNB2	Q03252	620 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	CEBPZ	Q03701	1054 aa	Known RBP	18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	GAS6	Q14393	721 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	ITPRIPL2	Q3MIP1	535 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	STXBP4	Q6ZWJ1	553 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	C1orf127	Q8N9H9	656 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	SAAL1	Q96ER3	474 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	ZFYVE19	Q96K21	471 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	SLC46A2	Q9BY10	475 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	GDAP2	Q9NXN4	497 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	UXT	Q9UBK9	157 aa	Predicted RBP	18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	GPR179	Q6PRD1	2367 aa		18.13	■□□□□ 0.49
CLN3-231	ENST00000568422	CEP250	Q9BV73	2442 aa		18.13	■□□□□ 0.49

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