RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 LRRTM3Q86VH5 581 aa20.08■□□□□ 0.81
CLN3-227ENST00000567495 HS6ST3Q8IZP7 471 aa20.08■□□□□ 0.81
CLN3-227ENST00000567495 GUF1Q8N442 669 aaKnown RBP20.08■□□□□ 0.81
CLN3-227ENST00000567495 TCEAL4Q96EI5 215 aa20.08■□□□□ 0.81
CLN3-227ENST00000567495 FAM84AQ96KN4 292 aa20.08■□□□□ 0.81
CLN3-227ENST00000567495 SEPT5Q99719 369 aaPredicted RBP20.08■□□□□ 0.81
CLN3-227ENST00000567495 DNAJC25Q9H1X3 360 aa20.08■□□□□ 0.81
CLN3-227ENST00000567495 TRAF3IP3Q9Y228 551 aa20.08■□□□□ 0.81
CLN3-227ENST00000567495 FRMD4BQ9Y2L6 1034 aa20.08■□□□□ 0.81
CLN3-227ENST00000567495 SCN1AP35498 2009 aa20.07■□□□□ 0.8
CLN3-227ENST00000567495 STAU1O95793 577 aaKnown RBP20.07■□□□□ 0.8
CLN3-227ENST00000567495 CFHP08603 1231 aa20.07■□□□□ 0.8
CLN3-227ENST00000567495 HAPLN1P10915 354 aaPredicted RBP20.07■□□□□ 0.8
CLN3-227ENST00000567495 ATICP31939 592 aa20.07■□□□□ 0.8
CLN3-227ENST00000567495 CCR2P41597 374 aa20.07■□□□□ 0.8
CLN3-227ENST00000567495 CLDN10P78369 228 aa20.07■□□□□ 0.8
CLN3-227ENST00000567495 INTS6LQ5JSJ4 861 aaKnown RBP20.07■□□□□ 0.8
CLN3-227ENST00000567495 FMR1NBQ8N0W7 255 aaPredicted RBP20.07■□□□□ 0.8
CLN3-227ENST00000567495 SMARCD2Q92925 531 aa20.07■□□□□ 0.8
CLN3-227ENST00000567495 E2F7Q96AV8 911 aa20.07■□□□□ 0.8
CLN3-227ENST00000567495 ELSPBP1Q96BH3 223 aa20.07■□□□□ 0.8
CLN3-227ENST00000567495 SHDQ96IW2 340 aa20.07■□□□□ 0.8
CLN3-227ENST00000567495 RPP25Q9BUL9 199 aaKnown RBP20.07■□□□□ 0.8
CLN3-227ENST00000567495 LRRC3Q9BY71 257 aa20.07■□□□□ 0.8
CLN3-227ENST00000567495 GTPBP4Q9BZE4 634 aaKnown RBP20.07■□□□□ 0.8
CLN3-227ENST00000567495 IRF2BPLQ9H1B7 796 aa20.07■□□□□ 0.8
CLN3-227ENST00000567495 ZFP14Q9HCL3 533 aa20.07■□□□□ 0.8
CLN3-227ENST00000567495 RMND1Q9NWS8 449 aa20.07■□□□□ 0.8
CLN3-227ENST00000567495 ABI2Q9NYB9 513 aaPredicted RBP20.07■□□□□ 0.8
CLN3-227ENST00000567495 HOOK1Q9UJC3 728 aaKnown RBP20.07■□□□□ 0.8
CLN3-227ENST00000567495 CIZ1Q9ULV3 898 aaPredicted RBP20.07■□□□□ 0.8
CLN3-227ENST00000567495 ZNF318Q5VUA4 2279 aa20.07■□□□□ 0.8
CLN3-227ENST00000567495 ANK1P16157 1881 aa20.07■□□□□ 0.8
CLN3-227ENST00000567495 MAPK13O15264 365 aa20.06■□□□□ 0.8
CLN3-227ENST00000567495 PHACTR2O75167 634 aa20.06■□□□□ 0.8
CLN3-227ENST00000567495 PRR29P0C7W0 189 aa20.06■□□□□ 0.8
CLN3-227ENST00000567495 RPL13P26373 211 aaKnown RBP20.06■□□□□ 0.8
CLN3-227ENST00000567495 VCPP55072 806 aaKnown RBP20.06■□□□□ 0.8
CLN3-227ENST00000567495 GPC5P78333 572 aa20.06■□□□□ 0.8
CLN3-227ENST00000567495 FAM160A1Q05DH4 1040 aa20.06■□□□□ 0.8
CLN3-227ENST00000567495 MAPRE1Q15691 268 aaKnown RBP20.06■□□□□ 0.8
CLN3-227ENST00000567495 TAF12Q16514 161 aa20.06■□□□□ 0.8
CLN3-227ENST00000567495 NFIL3Q16649 462 aa20.06■□□□□ 0.8
CLN3-227ENST00000567495 TMC8Q8IU68 726 aa20.06■□□□□ 0.8
CLN3-227ENST00000567495 TTC9BQ8N6N2 239 aa20.06■□□□□ 0.8
CLN3-227ENST00000567495 FAM200AQ8TCP9 573 aa20.06■□□□□ 0.8
CLN3-227ENST00000567495 TMC2Q8TDI7 906 aa20.06■□□□□ 0.8
CLN3-227ENST00000567495 GPR152Q8TDT2 470 aa20.06■□□□□ 0.8
CLN3-227ENST00000567495 PARD3BQ8TEW8 1205 aa20.06■□□□□ 0.8
CLN3-227ENST00000567495 SYAP1Q96A49 352 aaPredicted RBP20.06■□□□□ 0.8
CLN3-227ENST00000567495 ASB16Q96NS5 453 aa20.06■□□□□ 0.8
CLN3-227ENST00000567495 MMS19Q96T76 1030 aa20.06■□□□□ 0.8
CLN3-227ENST00000567495 KXD1Q9BQD3 176 aa20.06■□□□□ 0.8
CLN3-227ENST00000567495 TRPV4Q9HBA0 871 aa20.06■□□□□ 0.8
CLN3-227ENST00000567495 ZMYM5Q9UJ78 669 aa20.06■□□□□ 0.8
CLN3-227ENST00000567495 TACC1O75410 805 aa20.05■□□□□ 0.8
CLN3-227ENST00000567495 MOSPD3O75425 235 aa20.05■□□□□ 0.8
CLN3-227ENST00000567495 WARSP23381 471 aaKnown RBP20.05■□□□□ 0.8
CLN3-227ENST00000567495 RPL10AP62906 217 aaKnown RBP20.05■□□□□ 0.8
CLN3-227ENST00000567495 ARHGAP15Q53QZ3 475 aa20.05■□□□□ 0.8
CLN3-227ENST00000567495 FAM78AQ5JUQ0 283 aa20.05■□□□□ 0.8
CLN3-227ENST00000567495 SCARA3Q6AZY7 606 aa20.05■□□□□ 0.8
CLN3-227ENST00000567495 FLCNQ8NFG4 579 aa20.05■□□□□ 0.8
CLN3-227ENST00000567495 SHKBP1Q8TBC3 707 aa20.05■□□□□ 0.8
CLN3-227ENST00000567495 FUBP3Q96I24 572 aaKnown RBP eCLIP20.05■□□□□ 0.8
CLN3-227ENST00000567495 TIGD1Q96MW7 591 aa20.05■□□□□ 0.8
CLN3-227ENST00000567495 GZF1Q9H116 711 aaPredicted RBP20.05■□□□□ 0.8
CLN3-227ENST00000567495 ARHGEF3Q9NR81 526 aa20.05■□□□□ 0.8
CLN3-227ENST00000567495 CDH9Q9ULB4 789 aa20.05■□□□□ 0.8
CLN3-227ENST00000567495 DOCK6Q96HP0 2047 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 IKBKBO14920 756 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 SOAT2O75908 522 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 SMC2O95347 1197 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 CST3P01034 146 aaPredicted RBP20.04■□□□□ 0.8
CLN3-227ENST00000567495 RFX1P22670 979 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 CDC25CP30307 473 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 PTPN5P54829 565 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 TNNC1P63316 161 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 ENPEPQ07075 957 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 BIRC3Q13489 604 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 TEAD2Q15562 447 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 WDR72Q3MJ13 1102 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 CFAP221Q4G0U5 840 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 TANGO2Q6ICL3 276 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 PHLDB3Q6NSJ2 640 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 C4orf50Q6ZRC1 276 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 ENGASEQ8NFI3 743 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 ZSCAN18Q8TBC5 510 aaPredicted RBP20.04■□□□□ 0.8
CLN3-227ENST00000567495 ZNF516Q92618 1163 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 GSDMAQ96QA5 445 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 GCNAQ96QF7 691 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 PKMYT1Q99640 499 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 SLITRK6Q9H5Y7 841 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 VRTNQ9H8Y1 702 aa20.04■□□□□ 0.8
CLN3-227ENST00000567495 A0A1W2PRU2 124 aa20.03■□□□□ 0.8
CLN3-227ENST00000567495 KRBA1A5PL33 1030 aa20.03■□□□□ 0.8
CLN3-227ENST00000567495 STK25O00506 426 aa20.03■□□□□ 0.8
CLN3-227ENST00000567495 NPR3P17342 541 aa20.03■□□□□ 0.8
CLN3-227ENST00000567495 ATF6P18850 670 aa20.03■□□□□ 0.8
CLN3-227ENST00000567495 AOC1P19801 751 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms