RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 GPR17Q13304 367 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 VWA3BQ502W6 1294 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 SPOPLQ6IQ16 392 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 ANKRD54Q6NXT1 300 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 RSPO2Q6UXX9 243 aaPredicted RBP13.01□□□□□ -0.33
SF3B3-208ENST00000567250 OR10T2Q8NGX3 314 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 FAM200AQ8TCP9 573 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 SPPL2BQ8TCT7 592 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 TNIP3Q96KP6 325 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 FAM81BQ96LP2 452 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 SYT15Q9BQS2 421 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 PI4K2AQ9BTU6 479 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 ZCWPW1Q9H0M4 648 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 NDST4Q9H3R1 872 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 SMYD3Q9H7B4 428 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 FANCLQ9NW38 375 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 HSFX1Q9UBD0 423 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 AFF4Q9UHB7 1163 aaKnown RBP13.01□□□□□ -0.33
SF3B3-208ENST00000567250 CD207Q9UJ71 328 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 CDH9Q9ULB4 789 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 POLIQ9UNA4 740 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 DENND4AQ7Z401 1863 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 C2orf16Q68DN1 1984 aa13.01□□□□□ -0.33
SF3B3-208ENST00000567250 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13□□□□□ -0.33
SF3B3-208ENST00000567250 A8MXQ7 604 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 GOLGA6L19H0YKK7 550 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 ADAM12O43184 909 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 ABLIM3O94929 683 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 LRG1P02750 347 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 C8AP07357 584 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 GNL1P36915 607 aaPredicted RBP13□□□□□ -0.33
SF3B3-208ENST00000567250 ITIH3Q06033 890 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 PLD1Q13393 1074 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 UVSSAQ2YD98 709 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 PUS10Q3MIT2 529 aaKnown RBP13□□□□□ -0.33
SF3B3-208ENST00000567250 SLC39A12Q504Y0 691 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 FKBP15Q5T1M5 1219 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 SCARA3Q6AZY7 606 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 CES5AQ6NT32 575 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 LILRA6Q6PI73 481 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 LRSAM1Q6UWE0 723 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 CYP26C1Q6V0L0 522 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 GBP6Q6ZN66 633 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 C4orf50Q6ZRC1 276 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 UNC93AQ86WB7 457 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 CMASQ8NFW8 434 aaPredicted RBP13□□□□□ -0.33
SF3B3-208ENST00000567250 VN1R2Q8NFZ6 395 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 SEMA4DQ92854 862 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 MRPL45Q9BRJ2 306 aaKnown RBP13□□□□□ -0.33
SF3B3-208ENST00000567250 APOBEC3GQ9HC16 384 aaKnown RBP13□□□□□ -0.33
SF3B3-208ENST00000567250 PRUNE2Q8WUY3 3088 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 BRWD1Q9NSI6 2320 aa13□□□□□ -0.33
SF3B3-208ENST00000567250 ATP8B3O60423 1300 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 MTMR11A4FU01 709 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 XYLBO75191 536 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 ZMYND10O75800 440 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 HNRNPA1P09651 372 aaKnown RBP eCLIP12.99□□□□□ -0.33
SF3B3-208ENST00000567250 OR4Q2P0C623 313 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 ZNF18P17022 549 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 RAP1GAPP47736 663 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 GCNT1Q02742 428 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 ADCY1Q08828 1119 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 INCA1Q0VD86 236 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 SMAD4Q13485 552 aaKnown RBP12.99□□□□□ -0.33
SF3B3-208ENST00000567250 CUL2Q13617 745 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 NCAPHQ15003 741 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 KRT31Q15323 416 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 EXOC3L4Q17RC7 722 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 PPM1LQ5SGD2 360 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 TRIM65Q6PJ69 517 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 RNF19BQ6ZMZ0 732 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 OSTM1Q86WC4 334 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 DHX40Q8IX18 779 aaKnown RBP12.99□□□□□ -0.33
SF3B3-208ENST00000567250 TCEAL8Q8IYN2 117 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 PPM1KQ8N3J5 372 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 SLC7A14Q8TBB6 771 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 FUBP3Q96I24 572 aaKnown RBP eCLIP12.99□□□□□ -0.33
SF3B3-208ENST00000567250 MSLNLQ96KJ4 702 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 RTP3Q9BQQ7 232 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 INTS2Q9H0H0 1204 aaKnown RBP12.99□□□□□ -0.33
SF3B3-208ENST00000567250 TSPY26PQ9H489 355 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 CYP4F11Q9HBI6 524 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 ABCB6Q9NP58 842 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.99□□□□□ -0.333e-13■■■■■ 121.1
SF3B3-208ENST00000567250 TAB2Q9NYJ8 693 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 CLEC1BQ9P126 229 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 PCDHB5Q9Y5E4 795 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 INSL5Q9Y5Q6 135 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 MYH10P35580 1976 aa12.99□□□□□ -0.33
SF3B3-208ENST00000567250 PATJQ8NI35 1801 aa12.98□□□□□ -0.33
SF3B3-208ENST00000567250 H3BQ06 376 aaPredicted RBP12.98□□□□□ -0.33
SF3B3-208ENST00000567250 POU2F2P09086 479 aa12.98□□□□□ -0.33
SF3B3-208ENST00000567250 CD58P19256 250 aa12.98□□□□□ -0.33
SF3B3-208ENST00000567250 RFX1P22670 979 aa12.98□□□□□ -0.33
SF3B3-208ENST00000567250 ACAT1P24752 427 aaKnown RBP12.98□□□□□ -0.33
SF3B3-208ENST00000567250 LTBRP36941 435 aa12.98□□□□□ -0.33
SF3B3-208ENST00000567250 PSMC1P62191 440 aaKnown RBP12.98□□□□□ -0.33
SF3B3-208ENST00000567250 RBM10P98175 930 aaKnown RBP12.98□□□□□ -0.33
SF3B3-208ENST00000567250 LEXMQ3ZCV2 418 aa12.98□□□□□ -0.33
SF3B3-208ENST00000567250 MIIPQ5JXC2 388 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms