RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 CYP4A22Q5TCH4 519 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 CDCA2Q69YH5 1023 aaPredicted RBP12.27□□□□□ -0.45
CLN3-226ENST00000567160 SLC27A1Q6PCB7 646 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 STXBP4Q6ZWJ1 553 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 PDZD4Q76G19 769 aaPredicted RBP12.27□□□□□ -0.45
CLN3-226ENST00000567160 ZNF720Q7Z2F6 126 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 YAF2Q8IY57 180 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 SYNPOQ8N3V7 929 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 TRIML1Q8N9V2 468 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 E2F7Q96AV8 911 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 CORO1BQ9BR76 489 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 NTPCRQ9BSD7 190 aaKnown RBP12.27□□□□□ -0.45
CLN3-226ENST00000567160 SCNM1Q9BWG6 230 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 KLK14Q9P0G3 267 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 ARHGAP28Q9P2N2 729 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 MTRRQ9UBK8 725 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 KCNG1Q9UIX4 513 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 CDY1Q9Y6F8 540 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 FLNBO75369 2602 aaKnown RBP12.27□□□□□ -0.45
CLN3-226ENST00000567160 WDFY3Q8IZQ1 3526 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 ARHGEF37A1IGU5 675 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 CASTOR2A6NHX0 329 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 H0YCG3 227 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 PRRG1O14668 218 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 GIPC1O14908 333 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 LETM1O95202 739 aaPredicted RBP12.26□□□□□ -0.45
CLN3-226ENST00000567160 PRKCBP05771 671 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 CEACAM1P13688 526 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 EFNA5P52803 228 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 NLRP12P59046 1061 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 MBTD1Q05BQ5 628 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 POU5F1BQ06416 359 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 STRN3Q13033 797 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 PRSS36Q5K4E3 855 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 SH3PXD2AQ5TCZ1 1133 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 Q6ZS52 159 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 ANKS3Q6ZW76 656 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 EPM2AIP1Q7L775 607 aaPredicted RBP12.26□□□□□ -0.45
CLN3-226ENST00000567160 TAS1R3Q7RTX0 852 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 KBTBD6Q86V97 674 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 MFSD6LQ8IWD5 586 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 NELFCDQ8IXH7 590 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 ELMOD1Q8N336 334 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 ACCSQ96QU6 501 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 PAAF1Q9BRP4 392 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 CCDC113Q9H0I3 377 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 RBM12Q9NTZ6 932 aaKnown RBP12.26□□□□□ -0.45
CLN3-226ENST00000567160 CACNG4Q9UBN1 327 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 TBX20Q9UMR3 447 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 USP20Q9Y2K6 914 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 PCDHB13Q9Y5F0 798 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 PHLPP2Q6ZVD8 1323 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 LAMA1P25391 3075 aa12.26□□□□□ -0.45
CLN3-226ENST00000567160 ANK1P16157 1881 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 NBEAQ8NFP9 2946 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 WDR27A2RRH5 827 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 C4orf47A7E2U8 309 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 EIF3DO15371 548 aaKnown RBP eCLIP12.25□□□□□ -0.45
CLN3-226ENST00000567160 B4GALT5O43286 388 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 PPP1R37O75864 691 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 NPTXRO95502 500 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 EDN1P05305 212 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 THP07101 528 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 CD44P16070 742 aaKnown RBP12.25□□□□□ -0.45
CLN3-226ENST00000567160 ARF4P18085 180 aaPredicted RBP12.25□□□□□ -0.45
CLN3-226ENST00000567160 CSRP1P21291 193 aaKnown RBP12.25□□□□□ -0.45
CLN3-226ENST00000567160 FGFR3P22607 806 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 PRCPP42785 496 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 GTF2BQ00403 316 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 TYRO3Q06418 890 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 KCNA1Q09470 495 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 ALCAMQ13740 583 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 ELF2Q15723 593 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 STX1AQ16623 288 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 MAPK6Q16659 721 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 TMEM132AQ24JP5 1023 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 DPCR1Q3MIW9 517 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 IQCEQ6IPM2 695 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 KLHL10Q6JEL2 608 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 RALGPS2Q86X27 583 aaPredicted RBP12.25□□□□□ -0.45
CLN3-226ENST00000567160 IFNLR1Q8IU57 520 aaPredicted RBP12.25□□□□□ -0.45
CLN3-226ENST00000567160 SYCP3Q8IZU3 236 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 SCFD1Q8WVM8 642 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 BICD1Q96G01 975 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 ZC3H10Q96K80 434 aaKnown RBP12.25□□□□□ -0.45
CLN3-226ENST00000567160 STRA6Q9BX79 667 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 NFKBIZQ9BYH8 718 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 IKZF4Q9H2S9 585 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 ST6GALNAC4Q9H4F1 302 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 SMOC1Q9H4F8 434 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 TMEM134Q9H6X4 195 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 TRPV4Q9HBA0 871 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 NEUROG3Q9Y4Z2 214 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 BACE2Q9Y5Z0 518 aa12.25□□□□□ -0.45
CLN3-226ENST00000567160 DMXL2Q8TDJ6 3036 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 TTLL13PA6NNM8 815 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 SLC38A8A6NNN8 435 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 ARNTLO00327 626 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 CHADO15335 359 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 TRAPPC3O43617 180 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms