RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 L1RE1Q9UN81 338 aa22.3■■□□□ 1.16
CLN3-219ENST00000565778 ATP6V1DQ9Y5K8 247 aa22.3■■□□□ 1.16
CLN3-219ENST00000565778 UBE4BO95155 1302 aa22.3■■□□□ 1.16
CLN3-219ENST00000565778 ACTN4O43707 911 aaKnown RBP22.29■■□□□ 1.16
CLN3-219ENST00000565778 PFKFB1P16118 471 aa22.29■■□□□ 1.16
CLN3-219ENST00000565778 TNNI1P19237 187 aa22.29■■□□□ 1.16
CLN3-219ENST00000565778 FCARP24071 287 aa22.29■■□□□ 1.16
CLN3-219ENST00000565778 VIPR2P41587 438 aa22.29■■□□□ 1.16
CLN3-219ENST00000565778 MYL7Q01449 175 aa22.29■■□□□ 1.16
CLN3-219ENST00000565778 PRKCQQ04759 706 aa22.29■■□□□ 1.16
CLN3-219ENST00000565778 GRM2Q14416 872 aa22.29■■□□□ 1.16
CLN3-219ENST00000565778 SNRNP35Q16560 246 aaKnown RBP22.29■■□□□ 1.16
CLN3-219ENST00000565778 KNOP1Q1ED39 458 aaKnown RBP22.29■■□□□ 1.16
CLN3-219ENST00000565778 TMC8Q8IU68 726 aa22.29■■□□□ 1.16
CLN3-219ENST00000565778 TMEM86AQ8N2M4 240 aa22.29■■□□□ 1.16
CLN3-219ENST00000565778 GIPC2Q8TF65 315 aa22.29■■□□□ 1.16
CLN3-219ENST00000565778 FNBP1Q96RU3 617 aa22.29■■□□□ 1.16
CLN3-219ENST00000565778 LPIN3Q9BQK8 851 aa22.29■■□□□ 1.16
CLN3-219ENST00000565778 ACBD6Q9BR61 282 aa22.29■■□□□ 1.16
CLN3-219ENST00000565778 TRMT61BQ9BVS5 477 aaKnown RBP22.29■■□□□ 1.16
CLN3-219ENST00000565778 ATXN3LQ9H3M9 355 aa22.29■■□□□ 1.16
CLN3-219ENST00000565778 DDX43Q9NXZ2 648 aaKnown RBP22.29■■□□□ 1.16
CLN3-219ENST00000565778 USP25Q9UHP3 1055 aa22.29■■□□□ 1.16
CLN3-219ENST00000565778 PCDHB5Q9Y5E4 795 aa22.29■■□□□ 1.16
CLN3-219ENST00000565778 FGF19O95750 216 aa22.28■■□□□ 1.16
CLN3-219ENST00000565778 DLATP10515 647 aaKnown RBP22.28■■□□□ 1.16
CLN3-219ENST00000565778 HAPLN1P10915 354 aaPredicted RBP22.28■■□□□ 1.16
CLN3-219ENST00000565778 WDR49Q8IV35 697 aa22.28■■□□□ 1.16
CLN3-219ENST00000565778 CCDC127Q96BQ5 260 aa22.28■■□□□ 1.16
CLN3-219ENST00000565778 HPDLQ96IR7 371 aa22.28■■□□□ 1.16
CLN3-219ENST00000565778 FOXQ1Q9C009 403 aa22.28■■□□□ 1.16
CLN3-219ENST00000565778 BRD9Q9H8M2 597 aa22.28■■□□□ 1.16
CLN3-219ENST00000565778 ZNF334Q9HCZ1 680 aaPredicted RBP22.28■■□□□ 1.16
CLN3-219ENST00000565778 EXOC1Q9NV70 894 aa22.28■■□□□ 1.16
CLN3-219ENST00000565778 TMLHEQ9NVH6 421 aa22.28■■□□□ 1.16
CLN3-219ENST00000565778 CGNQ9P2M7 1197 aaKnown RBP22.28■■□□□ 1.16
CLN3-219ENST00000565778 PTPRJQ12913 1337 aa22.28■■□□□ 1.16
CLN3-219ENST00000565778 KANSL1LA0AUZ9 987 aa22.27■■□□□ 1.16
CLN3-219ENST00000565778 CD72P21854 359 aa22.27■■□□□ 1.16
CLN3-219ENST00000565778 ACAT1P24752 427 aaKnown RBP22.27■■□□□ 1.16
CLN3-219ENST00000565778 GABRR2P28476 465 aa22.27■■□□□ 1.16
CLN3-219ENST00000565778 LHX1P48742 406 aa22.27■■□□□ 1.16
CLN3-219ENST00000565778 PSMD2Q13200 908 aa22.27■■□□□ 1.16
CLN3-219ENST00000565778 UBXN2BQ14CS0 331 aa22.27■■□□□ 1.16
CLN3-219ENST00000565778 NFE2Q16621 373 aaPredicted RBP22.27■■□□□ 1.16
CLN3-219ENST00000565778 BMT2Q1RMZ1 405 aa22.27■■□□□ 1.16
CLN3-219ENST00000565778 GAREM2Q75VX8 874 aa22.27■■□□□ 1.16
CLN3-219ENST00000565778 TRAPPC11Q7Z392 1133 aa22.27■■□□□ 1.16
CLN3-219ENST00000565778 GPIHBP1Q8IV16 184 aa22.27■■□□□ 1.16
CLN3-219ENST00000565778 TOP6BLQ8N6T0 577 aa22.27■■□□□ 1.16
CLN3-219ENST00000565778 PJA1Q8NG27 643 aa22.27■■□□□ 1.16
CLN3-219ENST00000565778 PI4K2AQ9BTU6 479 aa22.27■■□□□ 1.16
CLN3-219ENST00000565778 SCAND2PQ9GZW5 306 aaPredicted RBP22.27■■□□□ 1.16
CLN3-219ENST00000565778 FAM170BA6NMN3 283 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 KLRC4O43908 158 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 PRPF40AO75400 957 aaKnown RBP22.26■■□□□ 1.15
CLN3-219ENST00000565778 PSMC3P17980 439 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 ATF6P18850 670 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 GDI1P31150 447 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 SYKP43405 635 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 CYP24A1Q07973 514 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 STK4Q13043 487 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 PSMD6Q15008 389 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 ANGPT1Q15389 498 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 SOWAHAQ2M3V2 549 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 KMT5BQ4FZB7 885 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 ARHGAP15Q53QZ3 475 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 VITQ6UXI7 678 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 DPH6Q7L8W6 267 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 ADGRF2Q8IZF7 708 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 E2F7Q96AV8 911 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 TRPV4Q9HBA0 871 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 HEBP1Q9NRV9 189 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 GTF3C4Q9UKN8 822 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 HPSEQ9Y251 543 aa22.26■■□□□ 1.15
CLN3-219ENST00000565778 HEPACAM2A8MVW5 462 aa22.25■■□□□ 1.15
CLN3-219ENST00000565778 EXOC3O60645 756 aa22.25■■□□□ 1.15
CLN3-219ENST00000565778 CST3P01034 146 aaPredicted RBP22.25■■□□□ 1.15
CLN3-219ENST00000565778 STXBP5Q5T5C0 1151 aa22.25■■□□□ 1.15
CLN3-219ENST00000565778 GPR158Q5T848 1215 aa22.25■■□□□ 1.15
CLN3-219ENST00000565778 TPRG1Q6ZUI0 275 aa22.25■■□□□ 1.15
CLN3-219ENST00000565778 OSTM1Q86WC4 334 aa22.25■■□□□ 1.15
CLN3-219ENST00000565778 ARID3BQ8IVW6 561 aaPredicted RBP22.25■■□□□ 1.15
CLN3-219ENST00000565778 MFSD6LQ8IWD5 586 aa22.25■■□□□ 1.15
CLN3-219ENST00000565778 C12orf56Q8IXR9 622 aa22.25■■□□□ 1.15
CLN3-219ENST00000565778 GOLGA5Q8TBA6 731 aa22.25■■□□□ 1.15
CLN3-219ENST00000565778 SPATA18Q8TC71 538 aa22.25■■□□□ 1.15
CLN3-219ENST00000565778 DEPDC1BQ8WUY9 529 aa22.25■■□□□ 1.15
CLN3-219ENST00000565778 IRF7Q92985 503 aa22.25■■□□□ 1.15
CLN3-219ENST00000565778 MMS19Q96T76 1030 aa22.25■■□□□ 1.15
CLN3-219ENST00000565778 MTF2Q9Y483 593 aaPredicted RBP22.25■■□□□ 1.15
CLN3-219ENST00000565778 DPYSL4O14531 572 aa22.24■■□□□ 1.15
CLN3-219ENST00000565778 GABRDO14764 452 aa22.24■■□□□ 1.15
CLN3-219ENST00000565778 ZNF263O14978 683 aa22.24■■□□□ 1.15
CLN3-219ENST00000565778 LRRN2O75325 713 aa22.24■■□□□ 1.15
CLN3-219ENST00000565778 PCSK1P29120 753 aa22.24■■□□□ 1.15
CLN3-219ENST00000565778 NDUFA8P51970 172 aa22.24■■□□□ 1.15
CLN3-219ENST00000565778 BECN1Q14457 450 aa22.24■■□□□ 1.15
CLN3-219ENST00000565778 INTS6LQ5JSJ4 861 aaKnown RBP22.24■■□□□ 1.15
CLN3-219ENST00000565778 ZNF852Q6ZMS4 543 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms