RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 TEX28O15482 410 aa18.52■□□□□ 0.56
CLN3-217ENST00000565354 LILRB3O75022 631 aa18.52■□□□□ 0.56
CLN3-217ENST00000565354 RPL17P18621 184 aaKnown RBP18.52■□□□□ 0.56
CLN3-217ENST00000565354 RFX1P22670 979 aa18.52■□□□□ 0.56
CLN3-217ENST00000565354 AARSP49588 968 aaKnown RBP eCLIP18.52■□□□□ 0.56
CLN3-217ENST00000565354 YWHAHQ04917 246 aaPredicted RBP18.52■□□□□ 0.56
CLN3-217ENST00000565354 KLHL40Q2TBA0 621 aa18.52■□□□□ 0.56
CLN3-217ENST00000565354 CTXN3Q4LDR2 81 aa18.52■□□□□ 0.56
CLN3-217ENST00000565354 ELMSAN1Q6PJG2 1045 aa18.52■□□□□ 0.56
CLN3-217ENST00000565354 RBM43Q6ZSC3 357 aaKnown RBP18.52■□□□□ 0.56
CLN3-217ENST00000565354 CREBRFQ8IUR6 639 aa18.52■□□□□ 0.56
CLN3-217ENST00000565354 ZC3H3Q8IXZ2 948 aaKnown RBP18.52■□□□□ 0.56
CLN3-217ENST00000565354 LNX1Q8TBB1 728 aaPredicted RBP18.52■□□□□ 0.56
CLN3-217ENST00000565354 RSAD2Q8WXG1 361 aa18.52■□□□□ 0.56
CLN3-217ENST00000565354 ZNF516Q92618 1163 aa18.52■□□□□ 0.56
CLN3-217ENST00000565354 HPDLQ96IR7 371 aa18.52■□□□□ 0.56
CLN3-217ENST00000565354 DUSP9Q99956 384 aaKnown RBP18.52■□□□□ 0.56
CLN3-217ENST00000565354 SRRTQ9BXP5 876 aaKnown RBP18.52■□□□□ 0.56
CLN3-217ENST00000565354 ANO10Q9NW15 660 aa18.52■□□□□ 0.56
CLN3-217ENST00000565354 SIX4Q9UIU6 781 aa18.52■□□□□ 0.56
CLN3-217ENST00000565354 DSEQ9UL01 958 aa18.52■□□□□ 0.56
CLN3-217ENST00000565354 TIMM13Q9Y5L4 95 aaPredicted RBP18.52■□□□□ 0.56
CLN3-217ENST00000565354 MTCL1Q9Y4B5 1905 aaKnown RBP18.51■□□□□ 0.55
CLN3-217ENST00000565354 SPTBN2O15020 2390 aa18.51■□□□□ 0.55
CLN3-217ENST00000565354 GPR179Q6PRD1 2367 aa18.51■□□□□ 0.55
CLN3-217ENST00000565354 IKBKBO14920 756 aa18.51■□□□□ 0.55
CLN3-217ENST00000565354 SPTLC1O15269 473 aa18.51■□□□□ 0.55
CLN3-217ENST00000565354 HUS1O60921 280 aa18.51■□□□□ 0.55
CLN3-217ENST00000565354 GNA14O95837 355 aa18.51■□□□□ 0.55
CLN3-217ENST00000565354 GLUD1P00367 558 aa18.51■□□□□ 0.55
CLN3-217ENST00000565354 TYMPP19971 482 aa18.51■□□□□ 0.55
CLN3-217ENST00000565354 GBP2P32456 591 aaPredicted RBP18.51■□□□□ 0.55
CLN3-217ENST00000565354 PIK3CAP42336 1068 aa18.51■□□□□ 0.55
CLN3-217ENST00000565354 ARPP19P56211 112 aa18.51■□□□□ 0.55
CLN3-217ENST00000565354 ENPEPQ07075 957 aa18.51■□□□□ 0.55
CLN3-217ENST00000565354 STX1AQ16623 288 aa18.51■□□□□ 0.55
CLN3-217ENST00000565354 TDRD10Q5VZ19 366 aaKnown RBP18.51■□□□□ 0.55
CLN3-217ENST00000565354 OVOS1Q6IE37 1185 aa18.51■□□□□ 0.55
CLN3-217ENST00000565354 PALB2Q86YC2 1186 aa18.51■□□□□ 0.55
CLN3-217ENST00000565354 GZF1Q9H116 711 aaPredicted RBP18.51■□□□□ 0.55
CLN3-217ENST00000565354 TBC1D17Q9HA65 648 aa18.51■□□□□ 0.55
CLN3-217ENST00000565354 WDR6Q9NNW5 1121 aaKnown RBP18.51■□□□□ 0.55
CLN3-217ENST00000565354 MAN1C1Q9NR34 630 aa18.51■□□□□ 0.55
CLN3-217ENST00000565354 EPS15L1Q9UBC2 864 aa18.51■□□□□ 0.55
CLN3-217ENST00000565354 MTRRQ9UBK8 725 aa18.51■□□□□ 0.55
CLN3-217ENST00000565354 SNX9Q9Y5X1 595 aa18.51■□□□□ 0.55
CLN3-217ENST00000565354 C4BPAP04003 597 aaKnown RBP18.5■□□□□ 0.55
CLN3-217ENST00000565354 CCDC192P0DO97 292 aa18.5■□□□□ 0.55
CLN3-217ENST00000565354 ERCC5P28715 1186 aaPredicted RBP18.5■□□□□ 0.55
CLN3-217ENST00000565354 ATICP31939 592 aa18.5■□□□□ 0.55
CLN3-217ENST00000565354 GCLMP48507 274 aa18.5■□□□□ 0.55
CLN3-217ENST00000565354 TNNC1P63316 161 aa18.5■□□□□ 0.55
CLN3-217ENST00000565354 CLDN10P78369 228 aa18.5■□□□□ 0.55
CLN3-217ENST00000565354 NCOA4Q13772 614 aa18.5■□□□□ 0.55
CLN3-217ENST00000565354 PUM1Q14671 1186 aaKnown RBP eCLIP18.5■□□□□ 0.55
CLN3-217ENST00000565354 SKOR2Q2VWA4 1001 aaPredicted RBP18.5■□□□□ 0.55
CLN3-217ENST00000565354 ZC3H14Q6PJT7 736 aaKnown RBP18.5■□□□□ 0.55
CLN3-217ENST00000565354 CYP26C1Q6V0L0 522 aa18.5■□□□□ 0.55
CLN3-217ENST00000565354 THEM5Q8N1Q8 247 aa18.5■□□□□ 0.55
CLN3-217ENST00000565354 SLC44A3Q8N4M1 653 aa18.5■□□□□ 0.55
CLN3-217ENST00000565354 MMS19Q96T76 1030 aa18.5■□□□□ 0.55
CLN3-217ENST00000565354 RHOBTB2Q9BYZ6 727 aa18.5■□□□□ 0.55
CLN3-217ENST00000565354 IMPG2Q9BZV3 1241 aa18.5■□□□□ 0.55
CLN3-217ENST00000565354 DPP7Q9UHL4 492 aa18.5■□□□□ 0.55
CLN3-217ENST00000565354 CA14Q9ULX7 337 aa18.5■□□□□ 0.55
CLN3-217ENST00000565354 BACE2Q9Y5Z0 518 aa18.5■□□□□ 0.55
CLN3-217ENST00000565354 CDY1Q9Y6F8 540 aa18.5■□□□□ 0.55
CLN3-217ENST00000565354 VWA8A3KMH1 1905 aa18.5■□□□□ 0.55
CLN3-217ENST00000565354 CLUHO75153 1309 aa18.49■□□□□ 0.55
CLN3-217ENST00000565354 SCN1AP35498 2009 aa18.49■□□□□ 0.55
CLN3-217ENST00000565354 CCDC195A0A1B0GUA6 201 aa18.49■□□□□ 0.55
CLN3-217ENST00000565354 LETM1O95202 739 aaPredicted RBP18.49■□□□□ 0.55
CLN3-217ENST00000565354 CST3P01034 146 aaPredicted RBP18.49■□□□□ 0.55
CLN3-217ENST00000565354 SRFP11831 508 aa18.49■□□□□ 0.55
CLN3-217ENST00000565354 GTF2H1P32780 548 aa18.49■□□□□ 0.55
CLN3-217ENST00000565354 OR1D2P34982 312 aa18.49■□□□□ 0.55
CLN3-217ENST00000565354 MYL6P60660 151 aa18.49■□□□□ 0.55
CLN3-217ENST00000565354 ZNF699Q32M78 642 aa18.49■□□□□ 0.55
CLN3-217ENST00000565354 ZACNQ401N2 412 aa18.49■□□□□ 0.55
CLN3-217ENST00000565354 CT47A1Q5JQC4 288 aaPredicted RBP18.49■□□□□ 0.55
CLN3-217ENST00000565354 SV2AQ7L0J3 742 aa18.49■□□□□ 0.55
CLN3-217ENST00000565354 CCDC150Q8NCX0 1101 aa18.49■□□□□ 0.55
CLN3-217ENST00000565354 CXorf38Q8TB03 319 aa18.49■□□□□ 0.55
CLN3-217ENST00000565354 NXPE3Q969Y0 559 aa18.49■□□□□ 0.55
CLN3-217ENST00000565354 CLSTN3Q9BQT9 956 aa18.49■□□□□ 0.55
CLN3-217ENST00000565354 OXCT2Q9BYC2 517 aaPredicted RBP18.49■□□□□ 0.55
CLN3-217ENST00000565354 TMEM8AQ9HCN3 771 aa18.49■□□□□ 0.55
CLN3-217ENST00000565354 ACACBO00763 2458 aa18.49■□□□□ 0.55
CLN3-217ENST00000565354 CPB1P15086 417 aa18.48■□□□□ 0.55
CLN3-217ENST00000565354 MXI1P50539 228 aa18.48■□□□□ 0.55
CLN3-217ENST00000565354 PPP3CAQ08209 521 aa18.48■□□□□ 0.55
CLN3-217ENST00000565354 WSCD1Q658N2 575 aa18.48■□□□□ 0.55
CLN3-217ENST00000565354 KRT39Q6A163 491 aa18.48■□□□□ 0.55
CLN3-217ENST00000565354 PHLDB3Q6NSJ2 640 aa18.48■□□□□ 0.55
CLN3-217ENST00000565354 RUBCNQ92622 972 aa18.48■□□□□ 0.55
CLN3-217ENST00000565354 BORCS6Q96GS4 357 aa18.48■□□□□ 0.55
CLN3-217ENST00000565354 MYADMQ96S97 322 aa18.48■□□□□ 0.55
CLN3-217ENST00000565354 HINFPQ9BQA5 517 aa18.48■□□□□ 0.55
CLN3-217ENST00000565354 GDAP2Q9NXN4 497 aa18.48■□□□□ 0.55
CLN3-217ENST00000565354 MAGEC2Q9UBF1 373 aaPredicted RBP18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms