RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 GJB4Q9NTQ9 266 aa5.67□□□□□ -1.5
LINC00560-201ENST00000564593 CDC23Q9UJX2 597 aa5.67□□□□□ -1.5
LINC00560-201ENST00000564593 SORCS3Q9UPU3 1222 aa5.67□□□□□ -1.5
LINC00560-201ENST00000564593 PCDHGB2Q9Y5G2 931 aa5.67□□□□□ -1.5
LINC00560-201ENST00000564593 A0A1W2PPC4 97 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 RECQL4O94761 1208 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 XRCC6P12956 609 aaKnown RBP eCLIP5.66□□□□□ -1.5
LINC00560-201ENST00000564593 FGFR2P21802 821 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 TRAPPC10P48553 1259 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 CARSP49589 748 aaKnown RBP5.66□□□□□ -1.5
LINC00560-201ENST00000564593 HSD11B2P80365 405 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 FOXR2Q6PJQ5 311 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.66□□□□□ -1.5
LINC00560-201ENST00000564593 TSHZ1Q6ZSZ6 1077 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 TXLNBQ8N3L3 684 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 SDR16C5Q8N3Y7 309 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 IPCEF1Q8WWN9 437 aaPredicted RBP5.66□□□□□ -1.5
LINC00560-201ENST00000564593 SPSB4Q96A44 273 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 SLC46A1Q96NT5 459 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 CRB3Q9BUF7 120 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 TTYH3Q9C0H2 523 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 WDR12Q9GZL7 423 aaKnown RBP5.66□□□□□ -1.5
LINC00560-201ENST00000564593 CD248Q9HCU0 757 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 ETAA1Q9NY74 926 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 TRPM5Q9NZQ8 1165 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 MYO1AQ9UBC5 1043 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 HSFX1Q9UBD0 423 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 HESX1Q9UBX0 185 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 HDAC9Q9UKV0 1011 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 TCAF1Q9Y4C2 921 aa5.66□□□□□ -1.5
LINC00560-201ENST00000564593 CCDC195A0A1B0GUA6 201 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 CCDC78A2IDD5 438 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 ERN1O75460 977 aaKnown RBP5.65□□□□□ -1.5
LINC00560-201ENST00000564593 RPS6KA4O75676 772 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 TCEA3O75764 348 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 SCAF4O95104 1147 aaKnown RBP5.65□□□□□ -1.5
LINC00560-201ENST00000564593 GPANK1O95872 356 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 SPATA31D3P0C874 917 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 CYP2C9P11712 490 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 IL1R1P14778 569 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 FGFR4P22455 802 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 VIPR2P41587 438 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 BOP1Q14137 746 aaKnown RBP5.65□□□□□ -1.5
LINC00560-201ENST00000564593 IQCB1Q15051 598 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 PDCD4Q53EL6 469 aaKnown RBP5.65□□□□□ -1.5
LINC00560-201ENST00000564593 ERICH6BQ5W0A0 696 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 ZNF585AQ6P3V2 769 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 SPATA31D4Q6ZUB0 917 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 BEND5Q7L4P6 421 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 GDF7Q7Z4P5 450 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 PSD4Q8NDX1 1056 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 CHST13Q8NET6 341 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 MED15Q96RN5 788 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 PPCSQ9HAB8 311 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 TBC1D23Q9NUY8 699 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 ZSCAN32Q9NX65 697 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 VSX1Q9NZR4 365 aaPredicted RBP5.65□□□□□ -1.5
LINC00560-201ENST00000564593 ZNF212Q9UDV6 495 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 ST6GALNAC2Q9UJ37 374 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 RAD54BQ9Y620 910 aa5.65□□□□□ -1.5
LINC00560-201ENST00000564593 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 KRTAP23-1A1A580 65 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 TRIM24O15164 1050 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 TXNP10599 105 aaKnown RBP5.64□□□□□ -1.51
LINC00560-201ENST00000564593 CHRM3P20309 590 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 IL6STP40189 918 aaPredicted RBP5.64□□□□□ -1.51
LINC00560-201ENST00000564593 TECP42680 631 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 WNT3P56703 355 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 OCA2Q04671 838 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 PLP2Q04941 152 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 DHX8Q14562 1220 aaKnown RBP5.64□□□□□ -1.51
LINC00560-201ENST00000564593 KRT72Q14CN4 511 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 SLC35G1Q2M3R5 365 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 RRAGBQ5VZM2 374 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 ERAP2Q6P179 960 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 TAF2Q6P1X5 1199 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 MAPKAPK5Q8IW41 473 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 YAF2Q8IY57 180 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 SYTL1Q8IYJ3 562 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 CPT1CQ8TCG5 803 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 ZNF566Q969W8 418 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 LRIG1Q96JA1 1093 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 TEX101Q9BY14 249 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 RNF181Q9P0P0 153 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 MTO1Q9Y2Z2 717 aaKnown RBP5.64□□□□□ -1.51
LINC00560-201ENST00000564593 CHST2Q9Y4C5 530 aa5.64□□□□□ -1.51
LINC00560-201ENST00000564593 FOSP01100 380 aaPredicted RBP5.63□□□□□ -1.51
LINC00560-201ENST00000564593 KCNA2P16389 499 aa5.63□□□□□ -1.51
LINC00560-201ENST00000564593 HSPA7P48741 367 aa5.63□□□□□ -1.51
LINC00560-201ENST00000564593 TOB1P50616 345 aaPredicted RBP5.63□□□□□ -1.51
LINC00560-201ENST00000564593 TNFAIP2Q03169 654 aa5.63□□□□□ -1.51
LINC00560-201ENST00000564593 TRIM14Q14142 442 aa5.63□□□□□ -1.51
LINC00560-201ENST00000564593 PRKD1Q15139 912 aaPredicted RBP5.63□□□□□ -1.51
LINC00560-201ENST00000564593 MPEG1Q2M385 716 aa5.63□□□□□ -1.51
LINC00560-201ENST00000564593 LAYNQ6UX15 382 aa5.63□□□□□ -1.51
LINC00560-201ENST00000564593 ZDHHC24Q6UX98 284 aa5.63□□□□□ -1.51
LINC00560-201ENST00000564593 POC1BQ8TC44 478 aa5.63□□□□□ -1.51
LINC00560-201ENST00000564593 ZNF483Q8TF39 744 aaPredicted RBP5.63□□□□□ -1.51
LINC00560-201ENST00000564593 LRRC46Q96FV0 321 aa5.63□□□□□ -1.51
LINC00560-201ENST00000564593 PPP1R9BQ96SB3 815 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms