RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 FOXN3O00409 490 aaPredicted RBP22■■□□□ 1.11
CLN3-212ENST00000564574 SOX1O00570 391 aaPredicted RBP22■■□□□ 1.11
CLN3-212ENST00000564574 CASP14P31944 242 aa22■■□□□ 1.11
CLN3-212ENST00000564574 SOX5P35711 763 aa22■■□□□ 1.11
CLN3-212ENST00000564574 PSMD5Q16401 504 aa22■■□□□ 1.11
CLN3-212ENST00000564574 CTXN3Q4LDR2 81 aa22■■□□□ 1.11
CLN3-212ENST00000564574 FAM71AQ8IYT1 594 aa22■■□□□ 1.11
CLN3-212ENST00000564574 RBBP8NLQ8NC74 664 aaPredicted RBP22■■□□□ 1.11
CLN3-212ENST00000564574 WHAMMQ8TF30 809 aa22■■□□□ 1.11
CLN3-212ENST00000564574 B3GALT6Q96L58 329 aa22■■□□□ 1.11
CLN3-212ENST00000564574 NGRNQ9NPE2 291 aaKnown RBP22■■□□□ 1.11
CLN3-212ENST00000564574 FSCN2O14926 492 aa21.99■■□□□ 1.11
CLN3-212ENST00000564574 GRM6O15303 877 aa21.99■■□□□ 1.11
CLN3-212ENST00000564574 TBC1D4O60343 1298 aa21.99■■□□□ 1.11
CLN3-212ENST00000564574 PAEPP09466 180 aa21.99■■□□□ 1.11
CLN3-212ENST00000564574 CCDC172P0C7W6 258 aa21.99■■□□□ 1.11
CLN3-212ENST00000564574 KRT5P13647 590 aa21.99■■□□□ 1.11
CLN3-212ENST00000564574 ZNF132P52740 706 aa21.99■■□□□ 1.11
CLN3-212ENST00000564574 BPIFB4P59827 614 aa21.99■■□□□ 1.11
CLN3-212ENST00000564574 SMC1AQ14683 1233 aaKnown RBP21.99■■□□□ 1.11
CLN3-212ENST00000564574 TMC7Q7Z402 723 aa21.99■■□□□ 1.11
CLN3-212ENST00000564574 CNGA4Q8IV77 575 aa21.99■■□□□ 1.11
CLN3-212ENST00000564574 CRYBG2Q8N1P7 616 aa21.99■■□□□ 1.11
CLN3-212ENST00000564574 CPLX3Q8WVH0 158 aa21.99■■□□□ 1.11
CLN3-212ENST00000564574 TMEM176AQ96HP8 235 aa21.99■■□□□ 1.11
CLN3-212ENST00000564574 RTP3Q9BQQ7 232 aa21.99■■□□□ 1.11
CLN3-212ENST00000564574 SYT15Q9BQS2 421 aa21.99■■□□□ 1.11
CLN3-212ENST00000564574 CERS4Q9HA82 394 aa21.99■■□□□ 1.11
CLN3-212ENST00000564574 FNIP2Q9P278 1114 aa21.99■■□□□ 1.11
CLN3-212ENST00000564574 IRAK3Q9Y616 596 aa21.99■■□□□ 1.11
CLN3-212ENST00000564574 LRRC53A6NM62 1247 aa21.98■■□□□ 1.11
CLN3-212ENST00000564574 LMO2P25791 158 aa21.98■■□□□ 1.11
CLN3-212ENST00000564574 USP8P40818 1118 aa21.98■■□□□ 1.11
CLN3-212ENST00000564574 RAD23BP54727 409 aa21.98■■□□□ 1.11
CLN3-212ENST00000564574 TSPY1Q01534 308 aa21.98■■□□□ 1.11
CLN3-212ENST00000564574 ARID5BQ14865 1188 aa21.98■■□□□ 1.11
CLN3-212ENST00000564574 PTPN14Q15678 1187 aa21.98■■□□□ 1.11
CLN3-212ENST00000564574 INTS6LQ5JSJ4 861 aaKnown RBP21.98■■□□□ 1.11
CLN3-212ENST00000564574 SYN2Q92777 582 aaPredicted RBP21.98■■□□□ 1.11
CLN3-212ENST00000564574 LRCH3Q96II8 777 aa21.98■■□□□ 1.11
CLN3-212ENST00000564574 TWNKQ96RR1 684 aa21.98■■□□□ 1.11
CLN3-212ENST00000564574 TCF25Q9BQ70 676 aa21.98■■□□□ 1.11
CLN3-212ENST00000564574 ELOVL4Q9GZR5 314 aa21.98■■□□□ 1.11
CLN3-212ENST00000564574 ZNF576Q9H609 170 aa21.98■■□□□ 1.11
CLN3-212ENST00000564574 RXFP1Q9HBX9 757 aa21.98■■□□□ 1.11
CLN3-212ENST00000564574 ENTPD7Q9NQZ7 604 aa21.98■■□□□ 1.11
CLN3-212ENST00000564574 HMGXB4Q9UGU5 601 aa21.98■■□□□ 1.11
CLN3-212ENST00000564574 KIAA1257Q9ULG3 409 aa21.98■■□□□ 1.11
CLN3-212ENST00000564574 NME7Q9Y5B8 376 aa21.98■■□□□ 1.11
CLN3-212ENST00000564574 ATG2AQ2TAZ0 1938 aa21.98■■□□□ 1.11
CLN3-212ENST00000564574 SZT2Q5T011 3432 aa21.97■■□□□ 1.11
CLN3-212ENST00000564574 AKR1B15C9JRZ8 316 aaPredicted RBP21.97■■□□□ 1.11
CLN3-212ENST00000564574 LPXNO60711 386 aa21.97■■□□□ 1.11
CLN3-212ENST00000564574 LILRB3O75022 631 aa21.97■■□□□ 1.11
CLN3-212ENST00000564574 MFAP3LO75121 409 aa21.97■■□□□ 1.11
CLN3-212ENST00000564574 PDGFRBP09619 1106 aa21.97■■□□□ 1.11
CLN3-212ENST00000564574 FERP16591 822 aa21.97■■□□□ 1.11
CLN3-212ENST00000564574 DNAJB1P25685 340 aa21.97■■□□□ 1.11
CLN3-212ENST00000564574 KRT9P35527 623 aa21.97■■□□□ 1.11
CLN3-212ENST00000564574 ERVFC1P60507 584 aa21.97■■□□□ 1.11
CLN3-212ENST00000564574 SMARCB1Q12824 385 aa21.97■■□□□ 1.11
CLN3-212ENST00000564574 MAPRE1Q15691 268 aaKnown RBP21.97■■□□□ 1.11
CLN3-212ENST00000564574 ZNF394Q53GI3 561 aa21.97■■□□□ 1.11
CLN3-212ENST00000564574 SFMBT2Q5VUG0 894 aa21.97■■□□□ 1.11
CLN3-212ENST00000564574 PRSS55Q6UWB4 352 aaPredicted RBP21.97■■□□□ 1.11
CLN3-212ENST00000564574 DCP1BQ8IZD4 617 aaKnown RBP21.97■■□□□ 1.11
CLN3-212ENST00000564574 SLC4A11Q8NBS3 891 aa21.97■■□□□ 1.11
CLN3-212ENST00000564574 ZCWPW1Q9H0M4 648 aa21.97■■□□□ 1.11
CLN3-212ENST00000564574 AIPL1Q9NZN9 384 aa21.97■■□□□ 1.11
CLN3-212ENST00000564574 RNF225M0QZC1 329 aaPredicted RBP21.96■■□□□ 1.11
CLN3-212ENST00000564574 C2CD2LO14523 706 aa21.96■■□□□ 1.11
CLN3-212ENST00000564574 CXCL14O95715 111 aa21.96■■□□□ 1.11
CLN3-212ENST00000564574 PTPN1P18031 435 aaKnown RBP21.96■■□□□ 1.11
CLN3-212ENST00000564574 ACAT1P24752 427 aaKnown RBP21.96■■□□□ 1.11
CLN3-212ENST00000564574 PTK2Q05397 1052 aa21.96■■□□□ 1.11
CLN3-212ENST00000564574 SLC8B1Q6J4K2 584 aa21.96■■□□□ 1.11
CLN3-212ENST00000564574 ACOT1Q86TX2 421 aa21.96■■□□□ 1.11
CLN3-212ENST00000564574 B3GALNT2Q8NCR0 500 aa21.96■■□□□ 1.11
CLN3-212ENST00000564574 OR10T2Q8NGX3 314 aa21.96■■□□□ 1.11
CLN3-212ENST00000564574 CYP26A1O43174 497 aa21.95■■□□□ 1.1
CLN3-212ENST00000564574 HCRTO43612 131 aa21.95■■□□□ 1.1
CLN3-212ENST00000564574 GFPT2O94808 682 aa21.95■■□□□ 1.1
CLN3-212ENST00000564574 PNMA6AP0CW24 399 aaPredicted RBP21.95■■□□□ 1.1
CLN3-212ENST00000564574 VDRP11473 427 aa21.95■■□□□ 1.1
CLN3-212ENST00000564574 CLCN1P35523 988 aa21.95■■□□□ 1.1
CLN3-212ENST00000564574 NDUFV1P49821 464 aa21.95■■□□□ 1.1
CLN3-212ENST00000564574 CAMK1Q14012 370 aa21.95■■□□□ 1.1
CLN3-212ENST00000564574 STILQ15468 1287 aa21.95■■□□□ 1.1
CLN3-212ENST00000564574 ASIC2Q16515 512 aa21.95■■□□□ 1.1
CLN3-212ENST00000564574 PTPROQ16827 1216 aa21.95■■□□□ 1.1
CLN3-212ENST00000564574 TSR1Q2NL82 804 aaKnown RBP21.95■■□□□ 1.1
CLN3-212ENST00000564574 PLPP4Q5VZY2 271 aa21.95■■□□□ 1.1
CLN3-212ENST00000564574 FAM171BQ6P995 826 aa21.95■■□□□ 1.1
CLN3-212ENST00000564574 SPC24Q8NBT2 197 aa21.95■■□□□ 1.1
CLN3-212ENST00000564574 OR8K1Q8NGG5 319 aa21.95■■□□□ 1.1
CLN3-212ENST00000564574 GDPD5Q8WTR4 605 aa21.95■■□□□ 1.1
CLN3-212ENST00000564574 HEXIM2Q96MH2 286 aaKnown RBP21.95■■□□□ 1.1
CLN3-212ENST00000564574 DNAJC7Q99615 494 aa21.95■■□□□ 1.1
CLN3-212ENST00000564574 CLSTN3Q9BQT9 956 aa21.95■■□□□ 1.1
CLN3-212ENST00000564574 EMILIN2Q9BXX0 1053 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms