RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 TRIM9Q9C026 710 aa18.55■□□□□ 0.56
VPS9D1-203ENST00000563798 CHRDQ9H2X0 955 aa18.55■□□□□ 0.56
VPS9D1-203ENST00000563798 ATXN3LQ9H3M9 355 aa18.55■□□□□ 0.56
VPS9D1-203ENST00000563798 SLITRK6Q9H5Y7 841 aa18.55■□□□□ 0.56
VPS9D1-203ENST00000563798 PRMT8Q9NR22 394 aaPredicted RBP18.55■□□□□ 0.56
VPS9D1-203ENST00000563798 FOXD4L1Q9NU39 408 aa18.55■□□□□ 0.56
VPS9D1-203ENST00000563798 SOBPA7XYQ1 873 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 CUTAO60888 179 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 ITGB3P05106 788 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 CDC25CP30307 473 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 POLR2BP30876 1174 aaKnown RBP18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 NFE2Q16621 373 aaPredicted RBP18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 MGAT5BQ3V5L5 792 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 ARHGAP15Q53QZ3 475 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 STXBP5Q5T5C0 1151 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 TMEM86AQ8N2M4 240 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 GPD1LQ8N335 351 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 PDCL2Q8N4E4 241 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 SUMF1Q8NBK3 374 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 FAM3CQ92520 227 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 LRRC3BQ96PB8 259 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 SEPT5Q99719 369 aaPredicted RBP18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 LPIN3Q9BQK8 851 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 ACBD6Q9BR61 282 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 TASP1Q9H6P5 420 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 L1RE1Q9UN81 338 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 AGAP1Q9UPQ3 857 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 PCDHGA2Q9Y5H1 932 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 PIAS3Q9Y6X2 628 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 F5P12259 2224 aa18.54■□□□□ 0.56
VPS9D1-203ENST00000563798 EIF3DO15371 548 aaKnown RBP eCLIP18.53■□□□□ 0.56
VPS9D1-203ENST00000563798 RBP5P82980 135 aa18.53■□□□□ 0.56
VPS9D1-203ENST00000563798 AMPD3Q01432 767 aa18.53■□□□□ 0.56
VPS9D1-203ENST00000563798 GPR158Q5T848 1215 aa18.53■□□□□ 0.56
VPS9D1-203ENST00000563798 SHC4Q6S5L8 630 aa18.53■□□□□ 0.56
VPS9D1-203ENST00000563798 EPM2AIP1Q7L775 607 aaPredicted RBP18.53■□□□□ 0.56
VPS9D1-203ENST00000563798 LIMS2Q7Z4I7 341 aa18.53■□□□□ 0.56
VPS9D1-203ENST00000563798 IQUBQ8NA54 791 aa18.53■□□□□ 0.56
VPS9D1-203ENST00000563798 PKMYT1Q99640 499 aa18.53■□□□□ 0.56
VPS9D1-203ENST00000563798 FAM126AQ9BYI3 521 aaPredicted RBP18.53■□□□□ 0.56
VPS9D1-203ENST00000563798 C8orf33Q9H7E9 229 aaPredicted RBP18.53■□□□□ 0.56
VPS9D1-203ENST00000563798 PDE11AQ9HCR9 933 aa18.53■□□□□ 0.56
VPS9D1-203ENST00000563798 ABCB6Q9NP58 842 aa18.53■□□□□ 0.56
VPS9D1-203ENST00000563798 TFIP11Q9UBB9 837 aaKnown RBP18.53■□□□□ 0.56
VPS9D1-203ENST00000563798 SIX4Q9UIU6 781 aa18.53■□□□□ 0.56
VPS9D1-203ENST00000563798 PCDHB5Q9Y5E4 795 aa18.53■□□□□ 0.56
VPS9D1-203ENST00000563798 GOLGA8IPA6NC78 632 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 GOLGA8JA6NMD2 632 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 GABRDO14764 452 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 KINO60870 393 aaKnown RBP18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 HUS1O60921 280 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 LILRB5O75023 590 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 HMGA1P17096 107 aaKnown RBP18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 HOXD13P35453 343 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 TSPY1Q01534 308 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 CSTF1Q05048 431 aaKnown RBP18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 EHHADHQ08426 723 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 MTAPQ13126 283 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 SURF1Q15526 300 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 ARHGAP29Q52LW3 1261 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 DPH6Q7L8W6 267 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 YAF2Q8IY57 180 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 CSGALNACT2Q8N6G5 542 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 TOP6BLQ8N6T0 577 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 GLIS3Q8NEA6 775 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 ZNF507Q8TCN5 953 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 FAM200AQ8TCP9 573 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 KCNG4Q8TDN1 519 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 CSGALNACT1Q8TDX6 532 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 C7orf25Q9BPX7 421 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 PCIF1Q9H4Z3 704 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 MAGEF1Q9HAY2 307 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 KIAA1586Q9HCI6 787 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 TMLHEQ9NVH6 421 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 INTS13Q9NVM9 706 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 ZSCAN32Q9NX65 697 aa18.52■□□□□ 0.56
VPS9D1-203ENST00000563798 NUP210Q8TEM1 1887 aaPredicted RBP18.52■□□□□ 0.55
VPS9D1-203ENST00000563798 TCHHQ07283 1943 aa18.51■□□□□ 0.55
VPS9D1-203ENST00000563798 TICRRQ7Z2Z1 1910 aa18.51■□□□□ 0.55
VPS9D1-203ENST00000563798 WDR87Q6ZQQ6 2873 aa18.51■□□□□ 0.55
VPS9D1-203ENST00000563798 MYBPHLA2RUH7 354 aa18.51■□□□□ 0.55
VPS9D1-203ENST00000563798 ZNF233A6NK53 670 aa18.51■□□□□ 0.55
VPS9D1-203ENST00000563798 F11P03951 625 aa18.51■□□□□ 0.55
VPS9D1-203ENST00000563798 CHRNB1P11230 501 aa18.51■□□□□ 0.55
VPS9D1-203ENST00000563798 TDGF1P13385 188 aa18.51■□□□□ 0.55
VPS9D1-203ENST00000563798 SNRPFP62306 86 aaKnown RBP18.51■□□□□ 0.55
VPS9D1-203ENST00000563798 INTS6LQ5JSJ4 861 aaKnown RBP18.51■□□□□ 0.55
VPS9D1-203ENST00000563798 SCARA3Q6AZY7 606 aa18.51■□□□□ 0.55
VPS9D1-203ENST00000563798 ATL3Q6DD88 541 aa18.51■□□□□ 0.55
VPS9D1-203ENST00000563798 TMEM150AQ86TG1 271 aa18.51■□□□□ 0.55
VPS9D1-203ENST00000563798 GCNAQ96QF7 691 aa18.51■□□□□ 0.55
VPS9D1-203ENST00000563798 SLC46A2Q9BY10 475 aa18.51■□□□□ 0.55
VPS9D1-203ENST00000563798 DDX43Q9NXZ2 648 aaKnown RBP18.51■□□□□ 0.55
VPS9D1-203ENST00000563798 ABI2Q9NYB9 513 aaPredicted RBP18.51■□□□□ 0.55
VPS9D1-203ENST00000563798 NDRG2Q9UN36 371 aaKnown RBP18.51■□□□□ 0.55
VPS9D1-203ENST00000563798 EP300Q09472 2414 aaPredicted RBP18.51■□□□□ 0.55
VPS9D1-203ENST00000563798 SPTBN4Q9H254 2564 aa18.5■□□□□ 0.55
VPS9D1-203ENST00000563798 OTOGLQ3ZCN5 2332 aa18.5■□□□□ 0.55
VPS9D1-203ENST00000563798 DPYSL4O14531 572 aa18.5■□□□□ 0.55
VPS9D1-203ENST00000563798 TMEM191BP0C7N4 346 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms