RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 PIRO00625 290 aa20.52■□□□□ 0.88
VPS35-202ENST00000561713 SLC30A4O14863 429 aa20.52■□□□□ 0.88
VPS35-202ENST00000561713 ADRB1P08588 477 aa20.52■□□□□ 0.88
VPS35-202ENST00000561713 KPNA1P52294 538 aaPredicted RBP20.52■□□□□ 0.88
VPS35-202ENST00000561713 MLLT6P55198 1093 aaPredicted RBP20.52■□□□□ 0.88
VPS35-202ENST00000561713 GPR17Q13304 367 aa20.52■□□□□ 0.88
VPS35-202ENST00000561713 PPM1JQ5JR12 505 aa20.52■□□□□ 0.88
VPS35-202ENST00000561713 Q6ZS52 159 aa20.52■□□□□ 0.88
VPS35-202ENST00000561713 SV2BQ7L1I2 683 aa20.52■□□□□ 0.88
VPS35-202ENST00000561713 CD302Q8IX05 232 aa20.52■□□□□ 0.88
VPS35-202ENST00000561713 TTC8Q8TAM2 541 aa20.52■□□□□ 0.88
VPS35-202ENST00000561713 E2F7Q96AV8 911 aa20.52■□□□□ 0.88
VPS35-202ENST00000561713 HVCN1Q96D96 273 aa20.52■□□□□ 0.88
VPS35-202ENST00000561713 LPIN3Q9BQK8 851 aa20.52■□□□□ 0.88
VPS35-202ENST00000561713 PYM1Q9BRP8 204 aaKnown RBP20.52■□□□□ 0.88
VPS35-202ENST00000561713 C2orf42Q9NWW7 574 aa20.52■□□□□ 0.88
VPS35-202ENST00000561713 DPP3Q9NY33 737 aa20.52■□□□□ 0.88
VPS35-202ENST00000561713 GOLGA8IPA6NC78 632 aa20.51■□□□□ 0.87
VPS35-202ENST00000561713 GOLGA8JA6NMD2 632 aa20.51■□□□□ 0.87
VPS35-202ENST00000561713 K7ESF4 209 aa20.51■□□□□ 0.87
VPS35-202ENST00000561713 CHADO15335 359 aa20.51■□□□□ 0.87
VPS35-202ENST00000561713 STX6O43752 255 aa20.51■□□□□ 0.87
VPS35-202ENST00000561713 LRP3O75074 770 aa20.51■□□□□ 0.87
VPS35-202ENST00000561713 HOXC13P31276 330 aa20.51■□□□□ 0.87
VPS35-202ENST00000561713 FCHO2Q0JRZ9 810 aa20.51■□□□□ 0.87
VPS35-202ENST00000561713 LRRC32Q14392 662 aa20.51■□□□□ 0.87
VPS35-202ENST00000561713 SLC39A12Q504Y0 691 aa20.51■□□□□ 0.87
VPS35-202ENST00000561713 L1TD1Q5T7N2 865 aaKnown RBP20.51■□□□□ 0.87
VPS35-202ENST00000561713 HEATR6Q6AI08 1181 aaKnown RBP20.51■□□□□ 0.87
VPS35-202ENST00000561713 CENPPQ6IPU0 288 aa20.51■□□□□ 0.87
VPS35-202ENST00000561713 TXNDC11Q6PKC3 985 aa20.51■□□□□ 0.87
VPS35-202ENST00000561713 GLIS3Q8NEA6 775 aa20.51■□□□□ 0.87
VPS35-202ENST00000561713 LRRC3BQ96PB8 259 aa20.51■□□□□ 0.87
VPS35-202ENST00000561713 SEPT5Q99719 369 aaPredicted RBP20.51■□□□□ 0.87
VPS35-202ENST00000561713 FAM213AQ9BRX8 229 aa20.51■□□□□ 0.87
VPS35-202ENST00000561713 STRA6Q9BX79 667 aa20.51■□□□□ 0.87
VPS35-202ENST00000561713 DERAQ9Y315 318 aa20.51■□□□□ 0.87
VPS35-202ENST00000561713 C2CD2Q9Y426 696 aa20.51■□□□□ 0.87
VPS35-202ENST00000561713 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.51■□□□□ 0.87
VPS35-202ENST00000561713 GDF9O60383 454 aa20.5■□□□□ 0.87
VPS35-202ENST00000561713 GAP43P17677 238 aa20.5■□□□□ 0.87
VPS35-202ENST00000561713 ABCD1P33897 745 aa20.5■□□□□ 0.87
VPS35-202ENST00000561713 TAF6P49848 677 aa20.5■□□□□ 0.87
VPS35-202ENST00000561713 EPHB3P54753 998 aa20.5■□□□□ 0.87
VPS35-202ENST00000561713 MYBPC2Q14324 1141 aa20.5■□□□□ 0.87
VPS35-202ENST00000561713 SLC39A14Q15043 492 aa20.5■□□□□ 0.87
VPS35-202ENST00000561713 STK38Q15208 465 aa20.5■□□□□ 0.87
VPS35-202ENST00000561713 SCARA3Q6AZY7 606 aa20.5■□□□□ 0.87
VPS35-202ENST00000561713 SLFN12LQ6IEE8 588 aa20.5■□□□□ 0.87
VPS35-202ENST00000561713 CCDC73Q6ZRK6 1079 aa20.5■□□□□ 0.87
VPS35-202ENST00000561713 PRR23CQ6ZRP0 262 aa20.5■□□□□ 0.87
VPS35-202ENST00000561713 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.5■□□□□ 0.87
VPS35-202ENST00000561713 LONP2Q86WA8 852 aa20.5■□□□□ 0.87
VPS35-202ENST00000561713 ARID3BQ8IVW6 561 aaPredicted RBP20.5■□□□□ 0.87
VPS35-202ENST00000561713 STKLD1Q8NE28 680 aa20.5■□□□□ 0.87
VPS35-202ENST00000561713 HPS3Q969F9 1004 aa20.5■□□□□ 0.87
VPS35-202ENST00000561713 INTS4Q96HW7 963 aaKnown RBP20.5■□□□□ 0.87
VPS35-202ENST00000561713 ZFYVE19Q96K21 471 aa20.5■□□□□ 0.87
VPS35-202ENST00000561713 ACCSQ96QU6 501 aa20.5■□□□□ 0.87
VPS35-202ENST00000561713 CBWD1Q9BRT8 395 aa20.5■□□□□ 0.87
VPS35-202ENST00000561713 ASB7Q9H672 318 aa20.5■□□□□ 0.87
VPS35-202ENST00000561713 C8orf33Q9H7E9 229 aaPredicted RBP20.5■□□□□ 0.87
VPS35-202ENST00000561713 SEL1LQ9UBV2 794 aa20.5■□□□□ 0.87
VPS35-202ENST00000561713 MYBPHLA2RUH7 354 aa20.49■□□□□ 0.87
VPS35-202ENST00000561713 SPECC1L-ADORA2AF8WAN1 911 aa20.49■□□□□ 0.87
VPS35-202ENST00000561713 CYB561D2O14569 222 aa20.49■□□□□ 0.87
VPS35-202ENST00000561713 PRPF6O94906 941 aaKnown RBP20.49■□□□□ 0.87
VPS35-202ENST00000561713 PAPSS2O95340 614 aaPredicted RBP20.49■□□□□ 0.87
VPS35-202ENST00000561713 TFAMQ00059 246 aaKnown RBP20.49■□□□□ 0.87
VPS35-202ENST00000561713 PLD1Q13393 1074 aa20.49■□□□□ 0.87
VPS35-202ENST00000561713 CSRP2Q16527 193 aa20.49■□□□□ 0.87
VPS35-202ENST00000561713 FOXD4L6Q3SYB3 417 aaPredicted RBP20.49■□□□□ 0.87
VPS35-202ENST00000561713 WSCD1Q658N2 575 aa20.49■□□□□ 0.87
VPS35-202ENST00000561713 ARMCX5Q6P1M9 558 aa20.49■□□□□ 0.87
VPS35-202ENST00000561713 FOXD4L3Q6VB84 417 aaPredicted RBP20.49■□□□□ 0.87
VPS35-202ENST00000561713 GAREM2Q75VX8 874 aa20.49■□□□□ 0.87
VPS35-202ENST00000561713 BRSK2Q8IWQ3 736 aa20.49■□□□□ 0.87
VPS35-202ENST00000561713 MSANTD3Q96H12 275 aa20.49■□□□□ 0.87
VPS35-202ENST00000561713 TSPAN18Q96SJ8 248 aa20.49■□□□□ 0.87
VPS35-202ENST00000561713 MKNK1Q9BUB5 465 aa20.49■□□□□ 0.87
VPS35-202ENST00000561713 GTSE1Q9NYZ3 720 aa20.49■□□□□ 0.87
VPS35-202ENST00000561713 MAP1BP46821 2468 aaKnown RBP20.48■□□□□ 0.87
VPS35-202ENST00000561713 FRMD3A2A2Y4 597 aa20.48■□□□□ 0.87
VPS35-202ENST00000561713 CYP11A1P05108 521 aa20.48■□□□□ 0.87
VPS35-202ENST00000561713 ATF6P18850 670 aa20.48■□□□□ 0.87
VPS35-202ENST00000561713 POLR2BP30876 1174 aaKnown RBP20.48■□□□□ 0.87
VPS35-202ENST00000561713 CTHP32929 405 aa20.48■□□□□ 0.87
VPS35-202ENST00000561713 CNR2P34972 360 aa20.48■□□□□ 0.87
VPS35-202ENST00000561713 ALDH1A3P47895 512 aa20.48■□□□□ 0.87
VPS35-202ENST00000561713 NASPP49321 788 aaPredicted RBP20.48■□□□□ 0.87
VPS35-202ENST00000561713 CYP4F8P98187 520 aa20.48■□□□□ 0.87
VPS35-202ENST00000561713 C1orf228Q6PIY5 440 aa20.48■□□□□ 0.87
VPS35-202ENST00000561713 SYCP3Q8IZU3 236 aa20.48■□□□□ 0.87
VPS35-202ENST00000561713 OXCT2Q9BYC2 517 aaPredicted RBP20.48■□□□□ 0.87
VPS35-202ENST00000561713 ZCWPW1Q9H0M4 648 aa20.48■□□□□ 0.87
VPS35-202ENST00000561713 PCIF1Q9H4Z3 704 aa20.48■□□□□ 0.87
VPS35-202ENST00000561713 PANK4Q9NVE7 773 aa20.48■□□□□ 0.87
VPS35-202ENST00000561713 LAMA1P25391 3075 aa20.47■□□□□ 0.87
VPS35-202ENST00000561713 PTPRDP23468 1912 aa20.47■□□□□ 0.87
VPS35-202ENST00000561713 IL18RAPO95256 599 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms