RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 HOXA7P31268 230 aaPredicted RBP6.92□□□□□ -1.3
LRRC28-220ENST00000561253 NOLC1Q14978 699 aaKnown RBP eCLIP6.92□□□□□ -1.3
LRRC28-220ENST00000561253 RTP5Q14D33 572 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 FSCN1Q16658 493 aaKnown RBP6.92□□□□□ -1.3
LRRC28-220ENST00000561253 CCL15Q16663 113 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 PTPN21Q16825 1174 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 UGT8Q16880 541 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 WDR72Q3MJ13 1102 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 ZNF385BQ569K4 471 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 CT83Q5H943 113 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 ZBTB41Q5SVQ8 909 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 ZNF648Q5T619 568 aaPredicted RBP6.92□□□□□ -1.3
LRRC28-220ENST00000561253 OGFOD2Q6N063 350 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 CCDC62Q6P9F0 684 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 PGM2L1Q6PCE3 622 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 TRMT10BQ6PF06 316 aaKnown RBP6.92□□□□□ -1.3
LRRC28-220ENST00000561253 CXXC5Q7LFL8 322 aaKnown RBP6.92□□□□□ -1.3
LRRC28-220ENST00000561253 KANSL1Q7Z3B3 1105 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 ANKRD23Q86SG2 305 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 DGKHQ86XP1 1220 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 ZNF444Q8N0Y2 327 aaPredicted RBP6.92□□□□□ -1.3
LRRC28-220ENST00000561253 FBXL16Q8N461 479 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 GMCL1P1Q8NEA9 526 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 AGXT2Q9BYV1 514 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 WNT8AQ9H1J5 351 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 R3HDMLQ9H3Y0 253 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 VCPKMTQ9H867 229 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 ZCCHC17Q9NP64 241 aaKnown RBP6.92□□□□□ -1.3
LRRC28-220ENST00000561253 KLHL42Q9P2K6 505 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 G3BP2Q9UN86 482 aaKnown RBP6.92□□□□□ -1.3
LRRC28-220ENST00000561253 AGTPBP1Q9UPW5 1226 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 SLC45A1Q9Y2W3 748 aa6.92□□□□□ -1.3
LRRC28-220ENST00000561253 MKI67P46013 3256 aaKnown RBP6.91□□□□□ -1.3
LRRC28-220ENST00000561253 TSPY2A6NKD2 308 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 MPHOSPH10O00566 681 aaKnown RBP6.91□□□□□ -1.3
LRRC28-220ENST00000561253 SH2B2O14492 632 aaPredicted RBP6.91□□□□□ -1.3
LRRC28-220ENST00000561253 NDUFB10O96000 172 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 CCND1P24385 295 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 GPR3P46089 330 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 NEK2P51955 445 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 INHBEP58166 350 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 CAP1Q01518 475 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 SREBF2Q12772 1141 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 TROAPQ12815 778 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 NFATC3Q12968 1075 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 STILQ15468 1287 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 PKN1Q16512 942 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 SLC35G1Q2M3R5 365 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 INAVAQ3KP66 663 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 KANK2Q63ZY3 851 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 UNQ6494/PRO21346Q6UXR6 183 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 ZBTB46Q86UZ6 589 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 BHLHE22Q8NFJ8 381 aaPredicted RBP6.91□□□□□ -1.3
LRRC28-220ENST00000561253 LPAR1Q92633 364 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 FUBP3Q96I24 572 aaKnown RBP eCLIP6.91□□□□□ -1.3
LRRC28-220ENST00000561253 TTC14Q96N46 770 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 TMEM47Q9BQJ4 181 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 TM6SF1Q9BZW5 370 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 KRT23Q9C075 422 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 MTG2Q9H4K7 406 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 LY9Q9HBG7 655 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 AS3MTQ9HBK9 375 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 MKS1Q9NXB0 559 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 RNF186Q9NXI6 227 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 CLIP2Q9UDT6 1046 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 TNKSO95271 1327 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 WDR19Q8NEZ3 1342 aa6.91□□□□□ -1.3
LRRC28-220ENST00000561253 F5H6K3 240 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 H0Y858 1186 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 CA12O43570 354 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 PRC1O43663 620 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 H2AFYO75367 372 aaKnown RBP6.9□□□□□ -1.3
LRRC28-220ENST00000561253 TSPAN15O95858 294 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 KRT1P04264 644 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 TOP1P11387 765 aaKnown RBP6.9□□□□□ -1.3
LRRC28-220ENST00000561253 CPA1P15085 419 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 USP14P54578 494 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 MLLT6P55198 1093 aaPredicted RBP6.9□□□□□ -1.3
LRRC28-220ENST00000561253 EVCP57679 992 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 CD83Q01151 205 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 KLRC3Q07444 240 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 CLUL1Q15846 466 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 RRP12Q5JTH9 1297 aaKnown RBP6.9□□□□□ -1.3
LRRC28-220ENST00000561253 CATSPERGQ6ZRH7 1159 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 FASTKD5Q7L8L6 764 aaKnown RBP6.9□□□□□ -1.3
LRRC28-220ENST00000561253 CHST3Q7LGC8 479 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 OTOP2Q7RTS6 562 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 SGMS1Q86VZ5 419 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 POU5F2Q8N7G0 328 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 C1orf162Q8NEQ5 155 aaPredicted RBP6.9□□□□□ -1.3
LRRC28-220ENST00000561253 REPS2Q8NFH8 660 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 NCOA7Q8NI08 942 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 CHMP4CQ96CF2 233 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 NEK1Q96PY6 1258 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 L2HGDHQ9H9P8 463 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 CD320Q9NPF0 282 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 AASDHPPTQ9NRN7 309 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 SPATA6Q9NWH7 488 aaPredicted RBP6.9□□□□□ -1.3
LRRC28-220ENST00000561253 DNAJC28Q9NX36 388 aa6.9□□□□□ -1.3
LRRC28-220ENST00000561253 SAGE1Q9NXZ1 904 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms