RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 NXF1Q9UBU9 619 aaKnown RBP13.92□□□□□ -0.18
NEDD8-208ENST00000560427 CDH9Q9ULB4 789 aa13.92□□□□□ -0.18
NEDD8-208ENST00000560427 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.92□□□□□ -0.18
NEDD8-208ENST00000560427 CCDC195A0A1B0GUA6 201 aa13.91□□□□□ -0.18
NEDD8-208ENST00000560427 MTMR11A4FU01 709 aa13.91□□□□□ -0.18
NEDD8-208ENST00000560427 PRRG1O14668 218 aa13.91□□□□□ -0.18
NEDD8-208ENST00000560427 SPATA31D3P0C874 917 aa13.91□□□□□ -0.18
NEDD8-208ENST00000560427 BMP1P13497 986 aa13.91□□□□□ -0.18
NEDD8-208ENST00000560427 ASPAP45381 313 aa13.91□□□□□ -0.18
NEDD8-208ENST00000560427 FMO5P49326 533 aa13.91□□□□□ -0.18
NEDD8-208ENST00000560427 KCNQ1P51787 676 aa13.91□□□□□ -0.18
NEDD8-208ENST00000560427 CBX2Q14781 532 aaPredicted RBP13.91□□□□□ -0.18
NEDD8-208ENST00000560427 CBWD6Q4V339 395 aa13.91□□□□□ -0.18
NEDD8-208ENST00000560427 WDR44Q5JSH3 913 aa13.91□□□□□ -0.18
NEDD8-208ENST00000560427 CBWD3Q5JTY5 395 aa13.91□□□□□ -0.18
NEDD8-208ENST00000560427 CBWD5Q5RIA9 395 aa13.91□□□□□ -0.18
NEDD8-208ENST00000560427 SPATA31D4Q6ZUB0 917 aa13.91□□□□□ -0.18
NEDD8-208ENST00000560427 FUBP3Q96I24 572 aaKnown RBP eCLIP13.91□□□□□ -0.18
NEDD8-208ENST00000560427 BCO2Q9BYV7 579 aa13.91□□□□□ -0.18
NEDD8-208ENST00000560427 NAT10Q9H0A0 1025 aaKnown RBP13.91□□□□□ -0.18
NEDD8-208ENST00000560427 SNX25Q9H3E2 840 aa13.91□□□□□ -0.18
NEDD8-208ENST00000560427 CYP3A43Q9HB55 503 aa13.91□□□□□ -0.18
NEDD8-208ENST00000560427 CYP4F11Q9HBI6 524 aa13.91□□□□□ -0.18
NEDD8-208ENST00000560427 MAGEC2Q9UBF1 373 aaPredicted RBP13.91□□□□□ -0.18
NEDD8-208ENST00000560427 INSL5Q9Y5Q6 135 aa13.91□□□□□ -0.18
NEDD8-208ENST00000560427 LRG1P02750 347 aa13.9□□□□□ -0.18
NEDD8-208ENST00000560427 AFPP02771 609 aaKnown RBP13.9□□□□□ -0.18
NEDD8-208ENST00000560427 OR4Q2P0C623 313 aa13.9□□□□□ -0.18
NEDD8-208ENST00000560427 TRIM21P19474 475 aaKnown RBP13.9□□□□□ -0.18
NEDD8-208ENST00000560427 EEF1GP26641 437 aaKnown RBP13.9□□□□□ -0.18
NEDD8-208ENST00000560427 GNL1P36915 607 aaPredicted RBP13.9□□□□□ -0.18
NEDD8-208ENST00000560427 TUFMP49411 452 aaKnown RBP13.9□□□□□ -0.18
NEDD8-208ENST00000560427 TYRO3Q06418 890 aa13.9□□□□□ -0.18
NEDD8-208ENST00000560427 CFAP221Q4G0U5 840 aa13.9□□□□□ -0.18
NEDD8-208ENST00000560427 SLC39A12Q504Y0 691 aa13.9□□□□□ -0.18
NEDD8-208ENST00000560427 TMC5Q6UXY8 1006 aa13.9□□□□□ -0.18
NEDD8-208ENST00000560427 RNF19BQ6ZMZ0 732 aa13.9□□□□□ -0.18
NEDD8-208ENST00000560427 UNC93AQ86WB7 457 aa13.9□□□□□ -0.18
NEDD8-208ENST00000560427 OSTM1Q86WC4 334 aa13.9□□□□□ -0.18
NEDD8-208ENST00000560427 C12orf76Q8N812 135 aaPredicted RBP13.9□□□□□ -0.18
NEDD8-208ENST00000560427 SMG7Q92540 1137 aaKnown RBP13.9□□□□□ -0.18
NEDD8-208ENST00000560427 ZNF707Q96C28 371 aaPredicted RBP13.9□□□□□ -0.18
NEDD8-208ENST00000560427 PKMYT1Q99640 499 aa13.9□□□□□ -0.18
NEDD8-208ENST00000560427 SYT15Q9BQS2 421 aa13.9□□□□□ -0.18
NEDD8-208ENST00000560427 MRPL45Q9BRJ2 306 aaKnown RBP13.9□□□□□ -0.18
NEDD8-208ENST00000560427 PHF7Q9BWX1 381 aaPredicted RBP13.9□□□□□ -0.18
NEDD8-208ENST00000560427 DNAI2Q9GZS0 605 aa13.9□□□□□ -0.18
NEDD8-208ENST00000560427 SMYD3Q9H7B4 428 aa13.9□□□□□ -0.18
NEDD8-208ENST00000560427 MTCL1Q9Y4B5 1905 aaKnown RBP13.9□□□□□ -0.18
NEDD8-208ENST00000560427 GTPBP10A4D1E9 387 aaKnown RBP13.89□□□□□ -0.19
NEDD8-208ENST00000560427 RFPL2O75678 378 aa13.89□□□□□ -0.19
NEDD8-208ENST00000560427 IL9P15248 144 aa13.89□□□□□ -0.19
NEDD8-208ENST00000560427 MYL5Q02045 173 aa13.89□□□□□ -0.19
NEDD8-208ENST00000560427 INCA1Q0VD86 236 aa13.89□□□□□ -0.19
NEDD8-208ENST00000560427 KCNH2Q12809 1159 aa13.89□□□□□ -0.19
NEDD8-208ENST00000560427 FAM171BQ6P995 826 aa13.89□□□□□ -0.19
NEDD8-208ENST00000560427 C4orf50Q6ZRC1 276 aa13.89□□□□□ -0.19
NEDD8-208ENST00000560427 IRF2BP1Q8IU81 584 aa13.89□□□□□ -0.19
NEDD8-208ENST00000560427 ELMOD1Q8N336 334 aa13.89□□□□□ -0.19
NEDD8-208ENST00000560427 LEMD2Q8NC56 503 aa13.89□□□□□ -0.19
NEDD8-208ENST00000560427 OR6B3Q8NGW1 331 aa13.89□□□□□ -0.19
NEDD8-208ENST00000560427 TNIP3Q96KP6 325 aa13.89□□□□□ -0.19
NEDD8-208ENST00000560427 PGLYRP2Q96PD5 576 aa13.89□□□□□ -0.19
NEDD8-208ENST00000560427 TMEM209Q96SK2 561 aa13.89□□□□□ -0.19
NEDD8-208ENST00000560427 BPIFA3Q9BQP9 254 aa13.89□□□□□ -0.19
NEDD8-208ENST00000560427 PIDD1Q9HB75 910 aa13.89□□□□□ -0.19
NEDD8-208ENST00000560427 APOBEC3GQ9HC16 384 aaKnown RBP13.89□□□□□ -0.19
NEDD8-208ENST00000560427 WDR6Q9NNW5 1121 aaKnown RBP13.89□□□□□ -0.19
NEDD8-208ENST00000560427 POLIQ9UNA4 740 aa13.89□□□□□ -0.19
NEDD8-208ENST00000560427 NFE2L3Q9Y4A8 694 aa13.89□□□□□ -0.19
NEDD8-208ENST00000560427 YIPF1Q9Y548 306 aa13.89□□□□□ -0.19
NEDD8-208ENST00000560427 PCDHB5Q9Y5E4 795 aa13.89□□□□□ -0.19
NEDD8-208ENST00000560427 A8MXQ7 604 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 SEC24AO95486 1093 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 VNN2O95498 520 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 TBXAS1P24557 533 aaPredicted RBP13.88□□□□□ -0.19
NEDD8-208ENST00000560427 ACAT1P24752 427 aaKnown RBP13.88□□□□□ -0.19
NEDD8-208ENST00000560427 MTIF2P46199 727 aaKnown RBP13.88□□□□□ -0.19
NEDD8-208ENST00000560427 ALDH1A3P47895 512 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 DUSP4Q13115 394 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 MAN2A1Q16706 1144 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 SMYD5Q6GMV2 418 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 SPOPLQ6IQ16 392 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 SCARA5Q6ZMJ2 495 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 C11orf57Q6ZUT1 292 aaPredicted RBP13.88□□□□□ -0.19
NEDD8-208ENST00000560427 LRRTM3Q86VH5 581 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 ADHFE1Q8IWW8 467 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 ATAD1Q8NBU5 361 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 MYCBPAPQ8TBZ2 947 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 SEMA4DQ92854 862 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 CEP295NLQ96MC4 621 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 PI4K2AQ9BTU6 479 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 APOL5Q9BWW9 433 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 AVENQ9NQS1 362 aaPredicted RBP13.88□□□□□ -0.19
NEDD8-208ENST00000560427 USTQ9Y2C2 406 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 NR2E1Q9Y466 385 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 ASB3Q9Y575 518 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 REV3LO60673 3130 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 CLUHO75153 1309 aa13.88□□□□□ -0.19
NEDD8-208ENST00000560427 XIRP2A4UGR9 3374 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms