RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 IRX2Q9BZI1 471 aaPredicted RBP11.94□□□□□ -0.5
USP3-218ENST00000560202 IL23AQ9NPF7 189 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 PCDHGC3Q9UN70 934 aa11.94□□□□□ -0.5
USP3-218ENST00000560202 TET1Q8NFU7 2136 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 SCN1AP35498 2009 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 FAM170AA1A519 330 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 MACROD2A1Z1Q3 448 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 CCDC66A2RUB6 948 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 ANKRD62A6NC57 917 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 TBKBP1A7MCY6 615 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 KIF2AO00139 706 aaPredicted RBP11.93□□□□□ -0.5
USP3-218ENST00000560202 GABRDO14764 452 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 KIF4AO95239 1232 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 AMHP03971 560 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 TMEM253P0C7T8 217 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 LMO2P25791 158 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 BRCC3P46736 316 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 OR1G1P47890 313 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 GNG11P61952 73 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 SGO2Q562F6 1265 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 ACOT1Q86TX2 421 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 OSTM1Q86WC4 334 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 PASD1Q8IV76 773 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 TMEM86AQ8N2M4 240 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 HASPINQ8TF76 798 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 CTNNBL1Q8WYA6 563 aaPredicted RBP11.93□□□□□ -0.5
USP3-218ENST00000560202 NRDE2Q9H7Z3 1164 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 PCDH10Q9P2E7 1040 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 DNAJB4Q9UDY4 337 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 STXBP5LQ9Y2K9 1186 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 PAXBP1Q9Y5B6 917 aa11.93□□□□□ -0.5
USP3-218ENST00000560202 MKI67P46013 3256 aaKnown RBP11.92□□□□□ -0.5
USP3-218ENST00000560202 BTNL10A8MVZ5 291 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 F8W810 466 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 TMEM189-UBE2V1I3L0A0 370 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 I3L4J1 428 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 M0QZQ0 153 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 HCRTO43612 131 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 DGKIO75912 1065 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 LSM8O95777 96 aaKnown RBP11.92□□□□□ -0.5
USP3-218ENST00000560202 ITGB1P05556 798 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 PDGFRBP09619 1106 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 ODC1P11926 461 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 ABCB4P21439 1286 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 NOMO3P69849 1222 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 CBX1P83916 185 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 CENPCQ03188 943 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 CNGA2Q16280 664 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 NAA35Q5VZE5 725 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 C7orf61Q8IZ16 206 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 CRYBG2Q8N1P7 616 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 C12orf29Q8N999 325 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 CPA5Q8WXQ8 436 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 BADQ92934 168 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 SECISBP2LQ93073 1101 aaKnown RBP11.92□□□□□ -0.5
USP3-218ENST00000560202 TOP1MTQ969P6 601 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 DNAI2Q9GZS0 605 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 THAP2Q9H0W7 228 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 DPEP3Q9H4B8 488 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 MYO1AQ9UBC5 1043 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 SALL4Q9UJQ4 1053 aa11.92□□□□□ -0.5
USP3-218ENST00000560202 TIMM13Q9Y5L4 95 aaPredicted RBP11.92□□□□□ -0.5
USP3-218ENST00000560202 O00370 1275 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 NRP1O14786 923 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 BAIAP3O94812 1187 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 MICAL2O94851 1124 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 ALDH2P05091 517 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 CYP11A1P05108 521 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 CDH5P33151 784 aaPredicted RBP11.91□□□□□ -0.5
USP3-218ENST00000560202 NSFP46459 744 aaKnown RBP11.91□□□□□ -0.5
USP3-218ENST00000560202 LHX1P48742 406 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 WDR5P61964 334 aaKnown RBP11.91□□□□□ -0.5
USP3-218ENST00000560202 GPC5P78333 572 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 PPIGQ13427 754 aaKnown RBP eCLIP11.91□□□□□ -0.55e-13■■□□□ 13.9
USP3-218ENST00000560202 STILQ15468 1287 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 ZNF569Q5MCW4 686 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 PPP1R2P3Q6NXS1 205 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 DENND1BQ6P3S1 775 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 SYT10Q6XYQ8 523 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 LRRC43Q8N309 656 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 RNF10Q8N5U6 811 aaKnown RBP11.91□□□□□ -0.5
USP3-218ENST00000560202 TMEM35BQ8NCS4 154 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 TNIP3Q96KP6 325 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 SUSD3Q96L08 255 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 TMEM175Q9BSA9 504 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 ZNF518BQ9C0D4 1074 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 LHX5Q9H2C1 402 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 DDX43Q9NXZ2 648 aaKnown RBP11.91□□□□□ -0.5
USP3-218ENST00000560202 DSEQ9UL01 958 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.91□□□□□ -0.5
USP3-218ENST00000560202 PRG3Q9Y2Y8 225 aaPredicted RBP11.91□□□□□ -0.5
USP3-218ENST00000560202 CEP83Q9Y592 693 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 TTC3P53804 2025 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 A0A0A6YYK5 440 aaPredicted RBP11.91□□□□□ -0.5
USP3-218ENST00000560202 ARHGEF37A1IGU5 675 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 BUB1O43683 1085 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 TADA2AO75478 443 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 MOCS3O95396 460 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 SLC11A1P49279 550 aa11.91□□□□□ -0.5
USP3-218ENST00000560202 NAP1L1P55209 391 aaKnown RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms