RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 HAPLN1P10915 354 aaPredicted RBP9.9□□□□□ -0.82
HDDC3-204ENST00000559834 PLCG1P19174 1290 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 DDX6P26196 483 aaKnown RBP eCLIP9.9□□□□□ -0.82
HDDC3-204ENST00000559834 NMT1P30419 496 aaKnown RBP9.9□□□□□ -0.82
HDDC3-204ENST00000559834 PNPLA4P41247 253 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 BFSP1Q12934 665 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 CCINQ13939 588 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 NFE2Q16621 373 aaPredicted RBP9.9□□□□□ -0.82
HDDC3-204ENST00000559834 SV2CQ496J9 727 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 WSCD1Q658N2 575 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 CC2D1AQ6P1N0 951 aaPredicted RBP9.9□□□□□ -0.82
HDDC3-204ENST00000559834 SLC39A4Q6P5W5 647 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 TXNDC11Q6PKC3 985 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 PRR23CQ6ZRP0 262 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 Q6ZS52 159 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 WDR5BQ86VZ2 330 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 CMTM8Q8IZV2 173 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 GIPC2Q8TF65 315 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 CACTINQ8WUQ7 758 aaKnown RBP9.9□□□□□ -0.82
HDDC3-204ENST00000559834 POMGNT1Q8WZA1 660 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 LARP4BQ92615 738 aaKnown RBP9.9□□□□□ -0.82
HDDC3-204ENST00000559834 LOXL4Q96JB6 756 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 CNTNAP3BQ96NU0 1288 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 LPIN3Q9BQK8 851 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 CNTNAP3Q9BZ76 1288 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 CCSER1Q9C0I3 900 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 IL21Q9HBE4 155 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 BLOC1S4Q9NUP1 217 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 ABI2Q9NYB9 513 aaPredicted RBP9.9□□□□□ -0.82
HDDC3-204ENST00000559834 CCDC39Q9UFE4 941 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 EXOC7Q9UPT5 735 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 SMC3Q9UQE7 1217 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.9□□□□□ -0.82
HDDC3-204ENST00000559834 PCDHB5Q9Y5E4 795 aa9.9□□□□□ -0.82
HDDC3-204ENST00000559834 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.9□□□□□ -0.82
HDDC3-204ENST00000559834 VPS13AQ96RL7 3174 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 MYO15AQ9UKN7 3530 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 ANKRD63C9JTQ0 380 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 TULP1O00294 542 aaPredicted RBP9.89□□□□□ -0.83
HDDC3-204ENST00000559834 PRAMEF12O95522 483 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 CSH1P0DML2 217 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 CSH2P0DML3 217 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 ATF6P18850 670 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 RPL10AP62906 217 aaKnown RBP9.89□□□□□ -0.83
HDDC3-204ENST00000559834 CYP4F8P98187 520 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 TSPY1Q01534 308 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 TNK2Q07912 1038 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 DMWDQ09019 674 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 RUNX3Q13761 415 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 KARSQ15046 597 aaKnown RBP9.89□□□□□ -0.83
HDDC3-204ENST00000559834 ZC2HC1CQ53FD0 456 aaPredicted RBP9.89□□□□□ -0.83
HDDC3-204ENST00000559834 ZNF720Q7Z2F6 126 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 CACNA2D4Q7Z3S7 1137 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 BRAPQ7Z569 592 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 LRRTM3Q86VH5 581 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 FAM160A2Q8N612 972 aaPredicted RBP9.89□□□□□ -0.83
HDDC3-204ENST00000559834 MRPS31Q92665 395 aaKnown RBP9.89□□□□□ -0.83
HDDC3-204ENST00000559834 HVCN1Q96D96 273 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 ZNF560Q96MR9 790 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 FIZ1Q96SL8 496 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 FAM83CQ9BQN1 747 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 KIF9Q9HAQ2 790 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 TDP1Q9NUW8 608 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 SEL1LQ9UBV2 794 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 SLC8A2Q9UPR5 921 aa9.89□□□□□ -0.83
HDDC3-204ENST00000559834 TICRRQ7Z2Z1 1910 aa9.88□□□□□ -0.83
HDDC3-204ENST00000559834 PDCD11Q14690 1871 aaKnown RBP9.88□□□□□ -0.83
HDDC3-204ENST00000559834 TRDMT1O14717 391 aaKnown RBP9.88□□□□□ -0.83
HDDC3-204ENST00000559834 PRPF40AO75400 957 aaKnown RBP9.88□□□□□ -0.83
HDDC3-204ENST00000559834 LDHAP00338 332 aaKnown RBP9.88□□□□□ -0.83
HDDC3-204ENST00000559834 F11P03951 625 aa9.88□□□□□ -0.83
HDDC3-204ENST00000559834 ADRB1P08588 477 aa9.88□□□□□ -0.83
HDDC3-204ENST00000559834 NLRP12P59046 1061 aa9.88□□□□□ -0.83
HDDC3-204ENST00000559834 SRSF5Q13243 272 aaKnown RBP9.88□□□□□ -0.83
HDDC3-204ENST00000559834 PDGFRLQ15198 375 aa9.88□□□□□ -0.83
HDDC3-204ENST00000559834 SF3A1Q15459 793 aaKnown RBP9.88□□□□□ -0.83
HDDC3-204ENST00000559834 FBXO43Q4G163 708 aa9.88□□□□□ -0.83
HDDC3-204ENST00000559834 TMEM196Q5HYL7 178 aa9.88□□□□□ -0.83
HDDC3-204ENST00000559834 PPM1JQ5JR12 505 aa9.88□□□□□ -0.83
HDDC3-204ENST00000559834 IL31Q6EBC2 164 aa9.88□□□□□ -0.83
HDDC3-204ENST00000559834 MON1AQ86VX9 555 aa9.88□□□□□ -0.83
HDDC3-204ENST00000559834 CAMKK1Q8N5S9 505 aa9.88□□□□□ -0.83
HDDC3-204ENST00000559834 MAB21L3Q8N8X9 362 aa9.88□□□□□ -0.83
HDDC3-204ENST00000559834 C12orf50Q8NA57 414 aaPredicted RBP9.88□□□□□ -0.83
HDDC3-204ENST00000559834 ACBD6Q9BR61 282 aa9.88□□□□□ -0.83
HDDC3-204ENST00000559834 SMG9Q9H0W8 520 aaKnown RBP9.88□□□□□ -0.83
HDDC3-204ENST00000559834 MRPL44Q9H9J2 332 aaKnown RBP9.88□□□□□ -0.83
HDDC3-204ENST00000559834 UPF2Q9HAU5 1272 aaKnown RBP9.88□□□□□ -0.83
HDDC3-204ENST00000559834 UXTQ9UBK9 157 aaPredicted RBP9.88□□□□□ -0.83
HDDC3-204ENST00000559834 STK17AQ9UEE5 414 aa9.88□□□□□ -0.83
HDDC3-204ENST00000559834 R3HCC1Q9Y3T6 440 aaKnown RBP9.88□□□□□ -0.83
HDDC3-204ENST00000559834 PCDHB13Q9Y5F0 798 aa9.88□□□□□ -0.83
HDDC3-204ENST00000559834 AXIN1O15169 862 aa9.87□□□□□ -0.83
HDDC3-204ENST00000559834 EXTL3O43909 919 aa9.87□□□□□ -0.83
HDDC3-204ENST00000559834 HUS1O60921 280 aa9.87□□□□□ -0.83
HDDC3-204ENST00000559834 RPP40O75818 363 aaKnown RBP9.87□□□□□ -0.83
HDDC3-204ENST00000559834 CCDC192P0DO97 292 aa9.87□□□□□ -0.83
HDDC3-204ENST00000559834 HMGA1P17096 107 aaKnown RBP9.87□□□□□ -0.83
HDDC3-204ENST00000559834 GAP43P17677 238 aa9.87□□□□□ -0.83
HDDC3-204ENST00000559834 DRD1P21728 446 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms