RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 RRAGAQ7L523 313 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 TAS1R1Q7RTX1 841 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 TMEM130Q8N3G9 435 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 C2orf15Q8WU43 125 aaKnown RBP9.85□□□□□ -0.83
LDLR-210ENST00000559340 SPAG5Q96R06 1193 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 CDCA3Q99618 268 aaPredicted RBP9.85□□□□□ -0.83
LDLR-210ENST00000559340 MRPL45Q9BRJ2 306 aaKnown RBP9.85□□□□□ -0.83
LDLR-210ENST00000559340 VN1R3Q9BXE9 311 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 STK33Q9BYT3 514 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 SMYD3Q9H7B4 428 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 TLE6Q9H808 572 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.85□□□□□ -0.839e-7■■■■■ 171.1
LDLR-210ENST00000559340 CISHQ9NSE2 258 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 FAM207AQ9NSI2 230 aaPredicted RBP9.85□□□□□ -0.83
LDLR-210ENST00000559340 CEP72Q9P209 647 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 MYO6Q9UM54 1294 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 SIK3Q9Y2K2 1263 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 PTPRDP23468 1912 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 ITIH6Q6UXX5 1313 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 ATG2AQ2TAZ0 1938 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 COL4A4P53420 1690 aaPredicted RBP9.84□□□□□ -0.83
LDLR-210ENST00000559340 C2orf71A6NGG8 1288 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 LILRB3O75022 631 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 CILPO75339 1184 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 PAEPP09466 180 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 PDGFRBP09619 1106 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 KRT5P13647 590 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 CPB1P15086 417 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 CD58P19256 250 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 IGFBP6P24592 240 aaPredicted RBP9.84□□□□□ -0.83
LDLR-210ENST00000559340 USP8P40818 1118 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 STAT1P42224 750 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 MRE11P49959 708 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 NDST1P52848 882 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 CDH8P55286 799 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 POLR2FP61218 127 aaKnown RBP9.84□□□□□ -0.83
LDLR-210ENST00000559340 PTK2Q05397 1052 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 GPR17Q13304 367 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 RAPGEF1Q13905 1077 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 RAB33AQ14088 237 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 STILQ15468 1287 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 INTS6LQ5JSJ4 861 aaKnown RBP9.84□□□□□ -0.83
LDLR-210ENST00000559340 SPECC1LQ69YQ0 1117 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 SLC8B1Q6J4K2 584 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 PRSS55Q6UWB4 352 aaPredicted RBP9.84□□□□□ -0.83
LDLR-210ENST00000559340 ARHGEF19Q8IW93 802 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 DRC7Q8IY82 874 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 CRYBG2Q8N1P7 616 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 GDPD5Q8WTR4 605 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 HDAC7Q8WUI4 952 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 KBTBD7Q8WVZ9 684 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 MRFAP1L1Q96HT8 127 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 KLHL5Q96PQ7 755 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 SYT15Q9BQS2 421 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 PRDM12Q9H4Q4 367 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 NSUN3Q9H649 340 aaKnown RBP9.84□□□□□ -0.83
LDLR-210ENST00000559340 SIX2Q9NPC8 291 aa9.84□□□□□ -0.83
LDLR-210ENST00000559340 ZNF638Q14966 1978 aaKnown RBP9.83□□□□□ -0.84
LDLR-210ENST00000559340 A0A1W2PQJ5 194 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 RFXAPO00287 272 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 MED7O43513 233 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 TBC1D4O60343 1298 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 LRRN2O75325 713 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 GLUD1P00367 558 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 CNPP09543 421 aaKnown RBP9.83□□□□□ -0.84
LDLR-210ENST00000559340 VDRP11473 427 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 PTPN1P18031 435 aaKnown RBP9.83□□□□□ -0.84
LDLR-210ENST00000559340 IGFBP4P22692 258 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 DNAJB1P25685 340 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 OR1D2P34982 312 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 RAP1GAPP47736 663 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 ZNF75DP51815 510 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 ARPP19P56211 112 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 SLC8A3P57103 927 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 GSE1Q14687 1217 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 DRAP1Q14919 205 aaPredicted RBP9.83□□□□□ -0.84
LDLR-210ENST00000559340 GRIN2CQ14957 1233 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 SCARA3Q6AZY7 606 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 IQCEQ6IPM2 695 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 TMEM270Q6UE05 265 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 CCDC149Q6ZUS6 474 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 SPRED2Q7Z698 418 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 OSTM1Q86WC4 334 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 SPATA2LQ8IUW3 424 aaPredicted RBP9.83□□□□□ -0.84
LDLR-210ENST00000559340 VSTM4Q8IW00 320 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 ZNF461Q8TAF7 563 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 MYCBPAPQ8TBZ2 947 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 SPPL2BQ8TCT7 592 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 SHC3Q92529 594 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 TMEM176AQ96HP8 235 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 B3GALT6Q96L58 329 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 HEXIM2Q96MH2 286 aaKnown RBP9.83□□□□□ -0.84
LDLR-210ENST00000559340 KREMEN1Q96MU8 473 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 ZCWPW1Q9H0M4 648 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 SDCBP2Q9H190 292 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 GANQ9H2C0 597 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 PLEKHA4Q9H4M7 779 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 GRPEL1Q9HAV7 217 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 NLRC4Q9NPP4 1024 aa9.83□□□□□ -0.84
LDLR-210ENST00000559340 PRDM6Q9NQX0 595 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms