RNA–Protein interactions for RNA: ENST00000558072.5

TPM1-209, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-209ENST00000558072 TDHQ8IZJ6 230 aa13.21□□□□□ -0.29
TPM1-209ENST00000558072 CRYBG2Q8N1P7 616 aa13.21□□□□□ -0.29
TPM1-209ENST00000558072 COLGALT1Q8NBJ5 622 aa13.21□□□□□ -0.29
TPM1-209ENST00000558072 MSANTD4Q8NCY6 345 aa13.21□□□□□ -0.29
TPM1-209ENST00000558072 CLP1Q92989 425 aaKnown RBP13.21□□□□□ -0.29
TPM1-209ENST00000558072 IGSF21Q96ID5 467 aa13.21□□□□□ -0.29
TPM1-209ENST00000558072 HEXIM2Q96MH2 286 aaKnown RBP13.21□□□□□ -0.29
TPM1-209ENST00000558072 ZNF518BQ9C0D4 1074 aa13.21□□□□□ -0.29
TPM1-209ENST00000558072 GPR88Q9GZN0 384 aa13.21□□□□□ -0.29
TPM1-209ENST00000558072 SMYD3Q9H7B4 428 aa13.21□□□□□ -0.29
TPM1-209ENST00000558072 NHEJ1Q9H9Q4 299 aaPredicted RBP13.21□□□□□ -0.29
TPM1-209ENST00000558072 CERS4Q9HA82 394 aa13.21□□□□□ -0.29
TPM1-209ENST00000558072 MTUS1Q9ULD2 1270 aa13.21□□□□□ -0.29
TPM1-209ENST00000558072 L1RE1Q9UN81 338 aa13.21□□□□□ -0.29
TPM1-209ENST00000558072 STXBP5LQ9Y2K9 1186 aa13.21□□□□□ -0.29
TPM1-209ENST00000558072 PCDHA11Q9Y5I1 949 aa13.21□□□□□ -0.29
TPM1-209ENST00000558072 RNF225M0QZC1 329 aaPredicted RBP13.2□□□□□ -0.3
TPM1-209ENST00000558072 OAZ2O95190 189 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 LSM8O95777 96 aaKnown RBP13.2□□□□□ -0.3
TPM1-209ENST00000558072 CA3P07451 260 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 FGFR3P22607 806 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 CLCN1P35523 988 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 NDST1P52848 882 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 CDR2Q01850 454 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 PLCB3Q01970 1234 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 UBE3AQ05086 875 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 CNGA2Q16280 664 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 WSCD1Q658N2 575 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 ZNF280DQ6N043 979 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 DDX53Q86TM3 631 aaKnown RBP13.2□□□□□ -0.3
TPM1-209ENST00000558072 SLC39A11Q8N1S5 342 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 KAT5Q92993 513 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 NOX5Q96PH1 765 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 ARID3AQ99856 593 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 AGPAT1Q99943 283 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 C17orf80Q9BSJ5 609 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 TTPALQ9BTX7 342 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.2□□□□□ -0.3
TPM1-209ENST00000558072 PBX4Q9BYU1 374 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 HAUS4Q9H6D7 363 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.2□□□□□ -0.3
TPM1-209ENST00000558072 DDX43Q9NXZ2 648 aaKnown RBP13.2□□□□□ -0.3
TPM1-209ENST00000558072 HESX1Q9UBX0 185 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 MSRAQ9UJ68 235 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 LZTS1Q9Y250 596 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 SCN1AP35498 2009 aa13.2□□□□□ -0.3
TPM1-209ENST00000558072 ATG2AQ2TAZ0 1938 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 CEP290O15078 2479 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 GOLGA6L9A6NEM1 432 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 EIF3CLB5ME19 914 aaKnown RBP13.19□□□□□ -0.3
TPM1-209ENST00000558072 SOX1O00570 391 aaPredicted RBP13.19□□□□□ -0.3
TPM1-209ENST00000558072 ZSCAN12O43309 604 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 THAP12O43422 761 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 SOD2P04179 222 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 GZMAP12544 262 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 CD19P15391 556 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 BRCC3P46736 316 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 RAD23BP54727 409 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 CDH8P55286 799 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 SLC18A3Q16572 532 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 NFE2Q16621 373 aaPredicted RBP13.19□□□□□ -0.3
TPM1-209ENST00000558072 FAM171A1Q5VUB5 890 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 ARHGAP17Q68EM7 881 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 WDR59Q6PJI9 974 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 CD300LGQ6UXG3 332 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 C4orf50Q6ZRC1 276 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 GPIHBP1Q8IV16 184 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 EPS8L1Q8TE68 723 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 C2orf15Q8WU43 125 aaKnown RBP13.19□□□□□ -0.3
TPM1-209ENST00000558072 KBTBD7Q8WVZ9 684 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 ZNF606Q8WXB4 792 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 TRIM11Q96F44 468 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 CALR3Q96L12 384 aaKnown RBP13.19□□□□□ -0.3
TPM1-209ENST00000558072 B3GALT6Q96L58 329 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 EIF3CQ99613 913 aaKnown RBP13.19□□□□□ -0.3
TPM1-209ENST00000558072 MRPL45Q9BRJ2 306 aaKnown RBP13.19□□□□□ -0.3
TPM1-209ENST00000558072 MARCH5Q9NX47 278 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 MAFFQ9ULX9 164 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 PCDHGC3Q9UN70 934 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 EPN1Q9Y6I3 576 aaPredicted RBP13.19□□□□□ -0.3
TPM1-209ENST00000558072 PDE4DIPQ5VU43 2346 aa13.19□□□□□ -0.3
TPM1-209ENST00000558072 LINC01553A4QN01 128 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 EPOPA6NHQ4 379 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 LPXNO60711 386 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 NDUFA10O95299 355 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 SETSIPP0DME0 302 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 PTPN1P18031 435 aaKnown RBP13.18□□□□□ -0.3
TPM1-209ENST00000558072 BMPR1AP36894 532 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 EIF4A3P38919 411 aaKnown RBP13.18□□□□□ -0.3
TPM1-209ENST00000558072 RAP1GAPP47736 663 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 CDR1P51861 262 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 ZNF394Q53GI3 561 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 HGSNATQ68CP4 663 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 PDE12Q6L8Q7 609 aaKnown RBP13.18□□□□□ -0.3
TPM1-209ENST00000558072 SLC47A2Q86VL8 602 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 SLC4A11Q8NBS3 891 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 B3GALNT2Q8NCR0 500 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 TMEM35BQ8NCS4 154 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 SYT15Q9BQS2 421 aa13.18□□□□□ -0.3
TPM1-209ENST00000558072 C11orf84Q9BUA3 381 aaPredicted RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms