RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 TREHO43280 583 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 PSTPIP1O43586 416 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 CILPO75339 1184 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 FGGP02679 453 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 HMGCRP04035 888 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 WEE2P0C1S8 567 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 VDRP11473 427 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 CYP3A5P20815 502 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 RRM1P23921 792 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 CCT5P48643 541 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 IFFO1Q0D2I5 559 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 CUL1Q13616 776 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 DHX34Q14147 1143 aaKnown RBP13.4□□□□□ -0.26
SHMT2-229ENST00000557348 KDM7AQ6ZMT4 941 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 PCSK9Q8NBP7 692 aaKnown RBP13.4□□□□□ -0.26
SHMT2-229ENST00000557348 TRIB2Q92519 343 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 LENG1Q96BZ8 264 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-229ENST00000557348 ZNF560Q96MR9 790 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 KRT12Q99456 494 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 C11orf70Q9BRQ4 267 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 CELF4Q9BZC1 486 aaKnown RBP13.4□□□□□ -0.26
SHMT2-229ENST00000557348 CHST12Q9NRB3 414 aa13.4□□□□□ -0.26
SHMT2-229ENST00000557348 RNF216Q9NWF9 866 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-229ENST00000557348 PIN4Q9Y237 131 aaKnown RBP13.4□□□□□ -0.26
SHMT2-229ENST00000557348 GOLGA6L7A0A1B0GV03 622 aa13.39□□□□□ -0.27
SHMT2-229ENST00000557348 TMEM110-MUSTN1A8MSY1 372 aa13.39□□□□□ -0.27
SHMT2-229ENST00000557348 ATMINO43313 823 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-229ENST00000557348 CABYRO75952 493 aa13.39□□□□□ -0.27
SHMT2-229ENST00000557348 GBP1P32455 592 aa13.39□□□□□ -0.27
SHMT2-229ENST00000557348 SNX16P57768 344 aa13.39□□□□□ -0.27
SHMT2-229ENST00000557348 MRPS6P82932 125 aaKnown RBP13.39□□□□□ -0.27
SHMT2-229ENST00000557348 SP3Q02447 781 aa13.39□□□□□ -0.27
SHMT2-229ENST00000557348 LMNB2Q03252 620 aa13.39□□□□□ -0.27
SHMT2-229ENST00000557348 PTPN11Q06124 597 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-229ENST00000557348 SCARA5Q6ZMJ2 495 aa13.39□□□□□ -0.27
SHMT2-229ENST00000557348 ERICH1Q86X53 443 aa13.39□□□□□ -0.27
SHMT2-229ENST00000557348 FEZF2Q8TBJ5 459 aa13.39□□□□□ -0.27
SHMT2-229ENST00000557348 ELMO3Q96BJ8 720 aa13.39□□□□□ -0.27
SHMT2-229ENST00000557348 TMEM176AQ96HP8 235 aa13.39□□□□□ -0.27
SHMT2-229ENST00000557348 RAB17Q9H0T7 212 aa13.39□□□□□ -0.27
SHMT2-229ENST00000557348 GDF3Q9NR23 364 aa13.39□□□□□ -0.27
SHMT2-229ENST00000557348 EHD2Q9NZN4 543 aa13.39□□□□□ -0.27
SHMT2-229ENST00000557348 RASAL2Q9UJF2 1139 aa13.39□□□□□ -0.27
SHMT2-229ENST00000557348 TRPV2Q9Y5S1 764 aa13.39□□□□□ -0.27
SHMT2-229ENST00000557348 CASP8AP2Q9UKL3 1982 aa13.39□□□□□ -0.27
SHMT2-229ENST00000557348 RALGAPA2Q2PPJ7 1873 aa13.39□□□□□ -0.27
SHMT2-229ENST00000557348 GRIN2DO15399 1336 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 SART1O43290 800 aaKnown RBP13.38□□□□□ -0.27
SHMT2-229ENST00000557348 HEXIM1O94992 359 aaKnown RBP13.38□□□□□ -0.27
SHMT2-229ENST00000557348 KCNE1P15382 129 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 CD19P15391 556 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 BRD2P25440 801 aaKnown RBP13.38□□□□□ -0.27
SHMT2-229ENST00000557348 CHRNA3P32297 505 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 PEX5P50542 639 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 RAD23BP54727 409 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 TMEM62Q0P6H9 643 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 MAMLD1Q13495 774 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 ARHGEF6Q15052 776 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 ZBTB6Q15916 424 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 SGO2Q562F6 1265 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 XKR4Q5GH76 650 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 DNAJC24Q6P3W2 148 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 UNC93AQ86WB7 457 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 PASD1Q8IV76 773 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 RHOT1Q8IXI2 618 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 TRPV1Q8NER1 839 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 NT5C1AQ9BXI3 368 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 SNTG2Q9NY99 539 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 SMARCAL1Q9NZC9 954 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 MGAMO43451 1857 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 ANK1P16157 1881 aa13.38□□□□□ -0.27
SHMT2-229ENST00000557348 FAM187AA6NFU0 413 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 RECQL4O94761 1208 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 ECM2O94769 699 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-229ENST00000557348 FAM163BP0C2L3 166 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 CTGFP29279 349 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 FNTAP49354 379 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 GNGT1P63211 74 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 PRKCZQ05513 592 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 PIGHQ14442 188 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-229ENST00000557348 CNGA2Q16280 664 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 LRRC38Q5VT99 294 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 ALKAL1Q6UXT8 129 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 WHAMMQ8TF30 809 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 ALG3Q92685 438 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 FAM129AQ9BZQ8 928 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 EPN3Q9H201 632 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 XPNPEP3Q9NQH7 507 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 HOMER3Q9NSC5 361 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 DMGDHQ9UI17 866 aaKnown RBP13.37□□□□□ -0.27
SHMT2-229ENST00000557348 POLIQ9UNA4 740 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 UTP11Q9Y3A2 253 aaKnown RBP13.37□□□□□ -0.27
SHMT2-229ENST00000557348 HMGB1P1B2RPK0 211 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-229ENST00000557348 H0YHG0 523 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 NDUFAB1O14561 156 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 SETSIPP0DME0 302 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 FGFR4P22455 802 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 NBPF20Q3BBV1 942 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 WLSQ5T9L3 541 aa13.37□□□□□ -0.27
SHMT2-229ENST00000557348 DCAF12L1Q5VU92 463 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms