RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 PABPC1LQ4VXU2 614 aaKnown RBP13.38□□□□□ -0.27
SLIRP-209ENST00000557342 ZNF667Q5HYK9 610 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 INTS6LQ5JSJ4 861 aaKnown RBP13.38□□□□□ -0.27
SLIRP-209ENST00000557342 KLHL10Q6JEL2 608 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 SV2AQ7L0J3 742 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 ATAD1Q8NBU5 361 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 LEMD2Q8NC56 503 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 NELFBQ8WX92 580 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 TAF4BQ92750 862 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 CEP63Q96MT8 703 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 IMPG2Q9BZV3 1241 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 XYLT2Q9H1B5 865 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 NUP62CLQ9H1M0 184 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 AVENQ9NQS1 362 aaPredicted RBP13.38□□□□□ -0.27
SLIRP-209ENST00000557342 DNMT3BQ9UBC3 853 aaKnown RBP13.38□□□□□ -0.27
SLIRP-209ENST00000557342 YIPF1Q9Y548 306 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 PCDHB5Q9Y5E4 795 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 NCOR1O75376 2440 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 PTPRDP23468 1912 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 ZNF197O14709 1029 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 DCXO43602 365 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 VNN1O95497 513 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 VNN2O95498 520 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 RHOP08100 348 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 BMP6P22004 513 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 PIK3CAP42336 1068 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 PAK1Q13153 545 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 MAPRE1Q15691 268 aaKnown RBP13.37□□□□□ -0.27
SLIRP-209ENST00000557342 MGAT5BQ3V5L5 792 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 C1orf220Q5T0J3 134 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 GET4Q7L5D6 327 aaPredicted RBP13.37□□□□□ -0.27
SLIRP-209ENST00000557342 FILIP1Q7Z7B0 1213 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 ITIH5Q86UX2 942 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 LRRTM3Q86VH5 581 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 OSTM1Q86WC4 334 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 CCDC150Q8NCX0 1101 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 SNX25Q9H3E2 840 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 METTL14Q9HCE5 456 aaKnown RBP13.37□□□□□ -0.27
SLIRP-209ENST00000557342 TMEM8AQ9HCN3 771 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 HCFC1R1Q9NWW0 138 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 EPS15L1Q9UBC2 864 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 NXF1Q9UBU9 619 aaKnown RBP13.37□□□□□ -0.27
SLIRP-209ENST00000557342 CDH9Q9ULB4 789 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 CTNND2Q9UQB3 1225 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 SLC27A5Q9Y2P5 690 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 ASB3Q9Y575 518 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 DENND4CQ5VZ89 1909 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 VCANP13611 3396 aa13.37□□□□□ -0.27
SLIRP-209ENST00000557342 C5orf42Q9H799 3197 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 FGFR1OPO95684 399 aaKnown RBP13.36□□□□□ -0.27
SLIRP-209ENST00000557342 HLA-DRAP01903 254 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 TRIM49P0CI25 452 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 TRIM49CP0CI26 452 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 ACAT1P24752 427 aaKnown RBP13.36□□□□□ -0.27
SLIRP-209ENST00000557342 GNL1P36915 607 aaPredicted RBP13.36□□□□□ -0.27
SLIRP-209ENST00000557342 GCLMP48507 274 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 NTHL1P78549 312 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 PPP3CAQ08209 521 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 VEPH1Q14D04 833 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 CYP4A22Q5TCH4 519 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 KRT39Q6A163 491 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 TTI2Q6NXR4 508 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 C4orf50Q6ZRC1 276 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 PDZD4Q76G19 769 aaPredicted RBP13.36□□□□□ -0.27
SLIRP-209ENST00000557342 OR6B3Q8NGW1 331 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 KBTBD7Q8WVZ9 684 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 NXPE3Q969Y0 559 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 EEF2KMTQ96G04 330 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 MYADMQ96S97 322 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 SEPT5Q99719 369 aaPredicted RBP13.36□□□□□ -0.27
SLIRP-209ENST00000557342 SYT15Q9BQS2 421 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 CORO1BQ9BR76 489 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 CRISPLD1Q9H336 500 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 MMRN2Q9H8L6 949 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 ABCB6Q9NP58 842 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 ASAH2Q9NR71 780 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 ABI2Q9NYB9 513 aaPredicted RBP13.36□□□□□ -0.27
SLIRP-209ENST00000557342 IGSF9Q9P2J2 1179 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 LIMD1Q9UGP4 676 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 ARMCX3Q9UH62 379 aaPredicted RBP13.36□□□□□ -0.27
SLIRP-209ENST00000557342 MUTYHQ9UIF7 546 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 CDH7Q9ULB5 785 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 MRPS23Q9Y3D9 190 aaKnown RBP13.36□□□□□ -0.27
SLIRP-209ENST00000557342 MYH10P35580 1976 aa13.36□□□□□ -0.27
SLIRP-209ENST00000557342 MICAL2O94851 1124 aa13.35□□□□□ -0.27
SLIRP-209ENST00000557342 GNA14O95837 355 aa13.35□□□□□ -0.27
SLIRP-209ENST00000557342 ASS1P00966 412 aaKnown RBP13.35□□□□□ -0.27
SLIRP-209ENST00000557342 HAPLN1P10915 354 aaPredicted RBP13.35□□□□□ -0.27
SLIRP-209ENST00000557342 LAMP2P13473 410 aa13.35□□□□□ -0.27
SLIRP-209ENST00000557342 MXI1P50539 228 aa13.35□□□□□ -0.27
SLIRP-209ENST00000557342 PTPN21Q16825 1174 aa13.35□□□□□ -0.27
SLIRP-209ENST00000557342 CCDC40Q4G0X9 1142 aa13.35□□□□□ -0.27
SLIRP-209ENST00000557342 DCAF17Q5H9S7 520 aaPredicted RBP13.35□□□□□ -0.27
SLIRP-209ENST00000557342 TCERG1LQ5VWI1 586 aa13.35□□□□□ -0.27
SLIRP-209ENST00000557342 FAM171BQ6P995 826 aa13.35□□□□□ -0.27
SLIRP-209ENST00000557342 FRMD5Q7Z6J6 570 aa13.35□□□□□ -0.27
SLIRP-209ENST00000557342 SPATA2LQ8IUW3 424 aaPredicted RBP13.35□□□□□ -0.27
SLIRP-209ENST00000557342 MLKLQ8NB16 471 aa13.35□□□□□ -0.27
SLIRP-209ENST00000557342 FAM200AQ8TCP9 573 aa13.35□□□□□ -0.27
SLIRP-209ENST00000557342 KHSRPQ92945 711 aaKnown RBP eCLIP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms