RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	COA1	Q9GZY4	146 aa		5.22	□□□□□ -1.57
SYNE2-223	ENST00000557005	CCDC68	Q9H2F9	335 aa		5.22	□□□□□ -1.57
SYNE2-223	ENST00000557005	AS3MT	Q9HBK9	375 aa		5.22	□□□□□ -1.57
SYNE2-223	ENST00000557005	NGRN	Q9NPE2	291 aa	Known RBP	5.22	□□□□□ -1.57
SYNE2-223	ENST00000557005	IGSF9B	Q9UPX0	1349 aa		5.22	□□□□□ -1.57
SYNE2-223	ENST00000557005	LOC100653049	A0A140TA62	436 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	FAM237B	A0A1B0GVD1	139 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	DPPA5	A6NC42	116 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	LIN7A	O14910	233 aa	Predicted RBP	5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	KRT34	O76011	436 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	HLA-DRA	P01903	254 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	SESN2	P58004	480 aa	Predicted RBP	5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	PSMC5	P62195	406 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	TBCC	Q15814	346 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	DUPD1	Q68J44	220 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	SLFN12L	Q6IEE8	588 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	RWDD4	Q6NW29	188 aa	Known RBP	5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	EXOC3L1	Q86VI1	746 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	ARID3B	Q8IVW6	561 aa	Predicted RBP	5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	EFHD1	Q9BUP0	239 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	RTFDC1	Q9BY42	306 aa	Predicted RBP	5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	IKZF4	Q9H2S9	585 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	ACP6	Q9NPH0	428 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	NMRK1	Q9NWW6	199 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	TBX20	Q9UMR3	447 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	COG5	Q9UP83	839 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	DNAJC16	Q9Y2G8	782 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	STARD13	Q9Y3M8	1113 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	AFG3L2	Q9Y4W6	797 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	PCDHA3	Q9Y5H8	950 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005		V9GYQ6	96 aa		5.21	□□□□□ -1.57
SYNE2-223	ENST00000557005	EME2	A4GXA9	379 aa	Predicted RBP	5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	DFFA	O00273	331 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	MAP3K6	O95382	1288 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	FAM200B	P0CF97	657 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	RPA1	P27694	616 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	PEX5	P50542	639 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	CDK16	Q00536	496 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	EML3	Q32P44	896 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	PDZD4	Q76G19	769 aa	Predicted RBP	5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	APTX	Q7Z2E3	356 aa	Known RBP	5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	CBWD2	Q8IUF1	395 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	TMEM35B	Q8NCS4	154 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	CATSPER1	Q8NEC5	780 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	SLC7A3	Q8WY07	619 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	PGBD4	Q96DM1	585 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	PGM2	Q96G03	612 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	TTYH3	Q9C0H2	523 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	DHX35	Q9H5Z1	703 aa	Known RBP	5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	DCLRE1B	Q9H816	532 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	RAB6B	Q9NRW1	208 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	KLHL8	Q9P2G9	620 aa	Predicted RBP	5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	USP21	Q9UK80	565 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	SLC12A4	Q9UP95	1085 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	DISP2	A7MBM2	1401 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005		K7ERI5	159 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	ATP9B	O43861	1147 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	AHCYL1	O43865	530 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	EXTL3	O43909	919 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	PIAS1	O75925	651 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	UNC5C	O95185	931 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	GH1	P01241	217 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	KRT7	P08729	469 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	VCAM1	P19320	739 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	POU5F1B	Q06416	359 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	HGSNAT	Q68CP4	663 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	HEATR6	Q6AI08	1181 aa	Known RBP	5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	GPAT2	Q6NUI2	795 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	TRIM72	Q6ZMU5	477 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZCCHC23	Q6ZST2	131 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZSWIM2	Q8NEG5	633 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	SCFD2	Q8WU76	684 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	SLC5A5	Q92911	643 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	HES6	Q96HZ4	224 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	SEMA6A	Q9H2E6	1030 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	ADNP	Q9H2P0	1102 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	KRT82	Q9NSB4	513 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	CHCHD3	Q9NX63	227 aa	Known RBP	5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	TM9SF1	O15321	606 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	RASSF9	O75901	435 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	USP1	O94782	785 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	KLHL2	O95198	593 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	LDHA	P00338	332 aa	Known RBP	5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	S100B	P04271	92 aa	Predicted RBP	5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	APRT	P07741	180 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	AR	P10275	920 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	TAC1	P20366	129 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	FGFR3	P22607	806 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	RRM1	P23921	792 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	CIITA	P33076	1130 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	OCRL	Q01968	901 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	TAP1	Q03518	808 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	CYLC2	Q14093	348 aa	Predicted RBP	5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	FLOT2	Q14254	428 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	GOLGA7B	Q2TAP0	167 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	FAM47C	Q5HY64	1035 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	EFHC1	Q5JVL4	640 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	CLEC4G	Q6UXB4	293 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	ENOSF1	Q7L5Y1	443 aa		5.21	□□□□□ -1.58
SYNE2-223	ENST00000557005	FAM160B2	Q86V87	743 aa		5.21	□□□□□ -1.58

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