RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 PNLDC1Q8NA58 520 aaKnown RBP4.55□□□□□ -1.68
SCFD1-218ENST00000556256 PRSS3P2Q8NHM4 247 aa4.55□□□□□ -1.68
SCFD1-218ENST00000556256 KLHDC4Q8TBB5 520 aa4.55□□□□□ -1.68
SCFD1-218ENST00000556256 ATRIPQ8WXE1 791 aa4.55□□□□□ -1.68
SCFD1-218ENST00000556256 DRC1Q96MC2 740 aa4.55□□□□□ -1.68
SCFD1-218ENST00000556256 ASB2Q96Q27 587 aa4.55□□□□□ -1.68
SCFD1-218ENST00000556256 DLL3Q9NYJ7 618 aa4.55□□□□□ -1.68
SCFD1-218ENST00000556256 GPR45Q9Y5Y3 372 aa4.55□□□□□ -1.68
SCFD1-218ENST00000556256 FNDC1Q4ZHG4 1894 aaPredicted RBP4.54□□□□□ -1.68
SCFD1-218ENST00000556256 ANXA1P04083 346 aa4.54□□□□□ -1.68
SCFD1-218ENST00000556256 PDHA1P08559 390 aa4.54□□□□□ -1.68
SCFD1-218ENST00000556256 CYP2C18P33260 490 aa4.54□□□□□ -1.68
SCFD1-218ENST00000556256 EEFSECP57772 596 aaKnown RBP4.54□□□□□ -1.68
SCFD1-218ENST00000556256 CDC42EP1Q00587 391 aa4.54□□□□□ -1.68
SCFD1-218ENST00000556256 ZNF804AQ7Z570 1209 aa4.54□□□□□ -1.68
SCFD1-218ENST00000556256 FAM136AQ96C01 138 aa4.54□□□□□ -1.68
SCFD1-218ENST00000556256 AHCYL2Q96HN2 611 aaKnown RBP4.54□□□□□ -1.68
SCFD1-218ENST00000556256 MARK4Q96L34 752 aa4.54□□□□□ -1.68
SCFD1-218ENST00000556256 ZNF277Q9NRM2 450 aaPredicted RBP4.54□□□□□ -1.68
SCFD1-218ENST00000556256 TRNAU1APQ9NX07 287 aaKnown RBP4.54□□□□□ -1.68
SCFD1-218ENST00000556256 WDR17Q8IZU2 1322 aa4.53□□□□□ -1.68
SCFD1-218ENST00000556256 QSOX1O00391 747 aa4.53□□□□□ -1.68
SCFD1-218ENST00000556256 BCAR3O75815 825 aa4.53□□□□□ -1.68
SCFD1-218ENST00000556256 AGXTP21549 392 aa4.53□□□□□ -1.68
SCFD1-218ENST00000556256 HOXA4Q00056 320 aaPredicted RBP4.53□□□□□ -1.68
SCFD1-218ENST00000556256 FAPQ12884 760 aa4.53□□□□□ -1.68
SCFD1-218ENST00000556256 PCID2Q5JVF3 399 aa4.53□□□□□ -1.68
SCFD1-218ENST00000556256 VPS53Q5VIR6 699 aa4.53□□□□□ -1.68
SCFD1-218ENST00000556256 TAF2Q6P1X5 1199 aa4.53□□□□□ -1.68
SCFD1-218ENST00000556256 UBXN4Q92575 508 aa4.53□□□□□ -1.68
SCFD1-218ENST00000556256 SCAMP4Q969E2 229 aa4.53□□□□□ -1.68
SCFD1-218ENST00000556256 SERHLQ9NQF3 203 aa4.53□□□□□ -1.68
SCFD1-218ENST00000556256 ETAA1Q9NY74 926 aa4.53□□□□□ -1.68
SCFD1-218ENST00000556256 E5RJQ4 531 aa4.52□□□□□ -1.69
SCFD1-218ENST00000556256 PPM1DO15297 605 aa4.52□□□□□ -1.69
SCFD1-218ENST00000556256 CYP4F2P78329 520 aa4.52□□□□□ -1.69
SCFD1-218ENST00000556256 ZNF618Q5T7W0 954 aa4.52□□□□□ -1.69
SCFD1-218ENST00000556256 MIS18BP1Q6P0N0 1132 aa4.52□□□□□ -1.69
SCFD1-218ENST00000556256 MRPL10Q7Z7H8 261 aaKnown RBP4.52□□□□□ -1.69
SCFD1-218ENST00000556256 FAM109AQ8N4B1 249 aa4.52□□□□□ -1.69
SCFD1-218ENST00000556256 PSD4Q8NDX1 1056 aa4.52□□□□□ -1.69
SCFD1-218ENST00000556256 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.52□□□□□ -1.69
SCFD1-218ENST00000556256 VCPIP1Q96JH7 1222 aa4.52□□□□□ -1.69
SCFD1-218ENST00000556256 ZC3H10Q96K80 434 aaKnown RBP4.52□□□□□ -1.69
SCFD1-218ENST00000556256 MACROD1Q9BQ69 325 aa4.52□□□□□ -1.69
SCFD1-218ENST00000556256 MRPS18AQ9NVS2 196 aaKnown RBP4.52□□□□□ -1.69
SCFD1-218ENST00000556256 MRPL42Q9Y6G3 142 aaKnown RBP4.52□□□□□ -1.69
SCFD1-218ENST00000556256 BRINP1O60477 761 aa4.51□□□□□ -1.69
SCFD1-218ENST00000556256 FGBP02675 491 aa4.51□□□□□ -1.69
SCFD1-218ENST00000556256 CD6P30203 668 aa4.51□□□□□ -1.69
SCFD1-218ENST00000556256 NAPRTQ6XQN6 538 aa4.51□□□□□ -1.69
SCFD1-218ENST00000556256 WDR53Q7Z5U6 358 aaPredicted RBP4.51□□□□□ -1.69
SCFD1-218ENST00000556256 MRGPRX4Q96LA9 322 aa4.51□□□□□ -1.69
SCFD1-218ENST00000556256 SOAT2O75908 522 aa4.5□□□□□ -1.69
SCFD1-218ENST00000556256 ITGALP20701 1170 aa4.5□□□□□ -1.69
SCFD1-218ENST00000556256 LIPAP38571 399 aa4.5□□□□□ -1.69
SCFD1-218ENST00000556256 TLE1Q04724 770 aa4.5□□□□□ -1.69
SCFD1-218ENST00000556256 HABP2Q14520 560 aaPredicted RBP4.5□□□□□ -1.69
SCFD1-218ENST00000556256 STAT4Q14765 748 aa4.5□□□□□ -1.69
SCFD1-218ENST00000556256 RAB39AQ14964 217 aa4.5□□□□□ -1.69
SCFD1-218ENST00000556256 TEDDM1Q5T9Z0 273 aa4.5□□□□□ -1.69
SCFD1-218ENST00000556256 MIGA2Q7L4E1 593 aa4.5□□□□□ -1.69
SCFD1-218ENST00000556256 MAVSQ7Z434 540 aa4.5□□□□□ -1.69
SCFD1-218ENST00000556256 DTX2Q86UW9 622 aa4.5□□□□□ -1.69
SCFD1-218ENST00000556256 PDSS2Q86YH6 399 aa4.5□□□□□ -1.69
SCFD1-218ENST00000556256 ACRBPQ8NEB7 543 aa4.5□□□□□ -1.69
SCFD1-218ENST00000556256 C16orf52Q8NHV5 167 aa4.5□□□□□ -1.69
SCFD1-218ENST00000556256 CYP2W1Q8TAV3 490 aa4.5□□□□□ -1.69
SCFD1-218ENST00000556256 PIGOQ8TEQ8 1089 aa4.5□□□□□ -1.69
SCFD1-218ENST00000556256 RITA1Q96K30 269 aa4.5□□□□□ -1.69
SCFD1-218ENST00000556256 DMRTA2Q96SC8 542 aa4.5□□□□□ -1.69
SCFD1-218ENST00000556256 DUSP22Q9NRW4 184 aa4.5□□□□□ -1.69
SCFD1-218ENST00000556256 FAM90A10PA6NDY2 464 aa4.49□□□□□ -1.69
SCFD1-218ENST00000556256 SGTAO43765 313 aa4.49□□□□□ -1.69
SCFD1-218ENST00000556256 VPS4BO75351 444 aa4.49□□□□□ -1.69
SCFD1-218ENST00000556256 ALPLP05186 524 aa4.49□□□□□ -1.69
SCFD1-218ENST00000556256 IL6RP08887 468 aaPredicted RBP4.49□□□□□ -1.69
SCFD1-218ENST00000556256 CHRM3P20309 590 aa4.49□□□□□ -1.69
SCFD1-218ENST00000556256 ATP5F1P24539 256 aaPredicted RBP4.49□□□□□ -1.69
SCFD1-218ENST00000556256 THBS3P49746 956 aa4.49□□□□□ -1.69
SCFD1-218ENST00000556256 PSMC1P62191 440 aaKnown RBP4.49□□□□□ -1.69
SCFD1-218ENST00000556256 TMPRSS15P98073 1019 aa4.49□□□□□ -1.69
SCFD1-218ENST00000556256 TWIST1Q15672 202 aa4.49□□□□□ -1.69
SCFD1-218ENST00000556256 SHC4Q6S5L8 630 aa4.49□□□□□ -1.69
SCFD1-218ENST00000556256 GADL1Q6ZQY3 521 aa4.49□□□□□ -1.69
SCFD1-218ENST00000556256 COQ8BQ96D53 544 aa4.49□□□□□ -1.69
SCFD1-218ENST00000556256 CLPTM1LQ96KA5 538 aa4.49□□□□□ -1.69
SCFD1-218ENST00000556256 USP35Q9P2H5 1018 aa4.49□□□□□ -1.69
SCFD1-218ENST00000556256 KLHL13Q9P2N7 655 aa4.49□□□□□ -1.69
SCFD1-218ENST00000556256 SAP30BPQ9UHR5 308 aaKnown RBP4.49□□□□□ -1.69
SCFD1-218ENST00000556256 LY6G6EA0A0G2JKS1 128 aa4.48□□□□□ -1.69
SCFD1-218ENST00000556256 FCHO1O14526 889 aa4.48□□□□□ -1.69
SCFD1-218ENST00000556256 PRKD3O94806 890 aa4.48□□□□□ -1.69
SCFD1-218ENST00000556256 TMEM191BP0C7N4 346 aa4.48□□□□□ -1.69
SCFD1-218ENST00000556256 ENGP17813 658 aa4.48□□□□□ -1.69
SCFD1-218ENST00000556256 SCP2P22307 547 aa4.48□□□□□ -1.69
SCFD1-218ENST00000556256 TOB1P50616 345 aaPredicted RBP4.48□□□□□ -1.69
SCFD1-218ENST00000556256 NANOS2P60321 138 aaKnown RBP4.48□□□□□ -1.69
SCFD1-218ENST00000556256 HTRA4P83105 476 aaPredicted RBP4.48□□□□□ -1.69
SCFD1-218ENST00000556256 IL10RAQ13651 578 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms