RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 SKILP12757 684 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 CPB1P15086 417 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 CYP11B1P15538 503 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 ACO1P21399 889 aaKnown RBP11.91□□□□□ -0.5
SHMT2-220ENST00000555634 BMP8BP34820 402 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 CDH8P55286 799 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 KRT83P78385 493 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 CDR2Q01850 454 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 UBE3AQ05086 875 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 C9orf50Q5SZB4 431 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 PPP2R2DQ66LE6 453 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 ELMSAN1Q6PJG2 1045 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 DDX53Q86TM3 631 aaKnown RBP11.91□□□□□ -0.5
SHMT2-220ENST00000555634 EPS8L1Q8TE68 723 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 CLP1Q92989 425 aaKnown RBP11.91□□□□□ -0.5
SHMT2-220ENST00000555634 ELMO3Q96BJ8 720 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 TRIM11Q96F44 468 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 GDF15Q99988 308 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 ACBD6Q9BR61 282 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 MRPL45Q9BRJ2 306 aaKnown RBP11.91□□□□□ -0.5
SHMT2-220ENST00000555634 MIS12Q9H081 205 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 HAUS4Q9H6D7 363 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 ENTPD7Q9NQZ7 604 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.91□□□□□ -0.5
SHMT2-220ENST00000555634 MRPL17Q9NRX2 175 aaKnown RBP11.91□□□□□ -0.5
SHMT2-220ENST00000555634 MARCH5Q9NX47 278 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 AJAP1Q9UKB5 411 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-220ENST00000555634 CNTN6Q9UQ52 1028 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 NT5C1B-RDH14C9J2C7 533 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 M0QYV0 167 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 B4GALT3O60512 393 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 FGF18O76093 207 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 ITGB1P05556 798 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 RB1P06400 928 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 PNMA6AP0CW24 399 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-220ENST00000555634 FGFR3P22607 806 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 TKTP29401 623 aaKnown RBP11.9□□□□□ -0.5
SHMT2-220ENST00000555634 PBX3P40426 434 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 NSFP46459 744 aaKnown RBP11.9□□□□□ -0.5
SHMT2-220ENST00000555634 KIF11P52732 1056 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 ZNF132P52740 706 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 RAD23BP54727 409 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 GOLGA8FQ08AF8 430 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 GOLGA8DPQ0D2H9 430 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 SMARCB1Q12824 385 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 PSMD5Q16401 504 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 NFE2Q16621 373 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-220ENST00000555634 VARS2Q5ST30 1063 aaKnown RBP11.9□□□□□ -0.5
SHMT2-220ENST00000555634 C10orf76Q5T2E6 689 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 KIAA1328Q86T90 577 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 ACOT1Q86TX2 421 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 SLC47A2Q86VL8 602 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 UBR7Q8N806 425 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 IPO4Q8TEX9 1081 aaKnown RBP11.9□□□□□ -0.5
SHMT2-220ENST00000555634 KBTBD7Q8WVZ9 684 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 TGS1Q96RS0 853 aaKnown RBP11.9□□□□□ -0.5
SHMT2-220ENST00000555634 AGPAT1Q99943 283 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 GPR88Q9GZN0 384 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 SDCBP2Q9H190 292 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 SYNCQ9H7C4 482 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 NHEJ1Q9H9Q4 299 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-220ENST00000555634 SLC28A3Q9HAS3 691 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 HCSTQ9UBK5 93 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 LZTS1Q9Y250 596 aa11.9□□□□□ -0.5
SHMT2-220ENST00000555634 ZSCAN12O43309 604 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 OAZ2O95190 189 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 CA3P07451 260 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 PDGFRBP09619 1106 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 CCDC175P0C221 793 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 FAM200BP0CF97 657 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 SETSIPP0DME0 302 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 DESP17661 470 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 BRD2P25440 801 aaKnown RBP11.89□□□□□ -0.51
SHMT2-220ENST00000555634 EIF4A3P38919 411 aaKnown RBP11.89□□□□□ -0.51
SHMT2-220ENST00000555634 RABGGTBP53611 331 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 BCAT1P54687 386 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 PSMC1P62191 440 aaKnown RBP11.89□□□□□ -0.51
SHMT2-220ENST00000555634 PLCB3Q01970 1234 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 CYP27A1Q02318 531 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 MAPK8IP2Q13387 824 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-220ENST00000555634 SMC1AQ14683 1233 aaKnown RBP11.89□□□□□ -0.51
SHMT2-220ENST00000555634 SLC18A3Q16572 532 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 GOLGA7BQ2TAP0 167 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 MDH1BQ5I0G3 518 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 INTS6LQ5JSJ4 861 aaKnown RBP11.89□□□□□ -0.51
SHMT2-220ENST00000555634 TAF3Q5VWG9 929 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 DPY19L2P1Q6NXN4 242 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 SPATA2LQ8IUW3 424 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-220ENST00000555634 GPR65Q8IYL9 337 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 TMEM130Q8N3G9 435 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 SLC4A11Q8NBS3 891 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 TMEM35BQ8NCS4 154 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 FBXO22Q8NEZ5 403 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 C2orf15Q8WU43 125 aaKnown RBP11.89□□□□□ -0.51
SHMT2-220ENST00000555634 RIN2Q8WYP3 895 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-220ENST00000555634 SMARCD1Q96GM5 515 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 EMILIN2Q9BXX0 1053 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 ZNF518BQ9C0D4 1074 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 ELOVL4Q9GZR5 314 aa11.89□□□□□ -0.51
SHMT2-220ENST00000555634 FAM49BQ9NUQ9 324 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms