RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 MYO9BQ13459 2157 aa11.67□□□□□ -0.54
SHMT2-218ENST00000555213 CHD9Q3L8U1 2897 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 A0A1W2PQJ5 194 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 LILRB3O75022 631 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 MFAP3LO75121 409 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 CLASP2O75122 1294 aaKnown RBP11.66□□□□□ -0.54
SHMT2-218ENST00000555213 C1RP00736 705 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 CST3P01034 146 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-218ENST00000555213 RPL17P18621 184 aaKnown RBP11.66□□□□□ -0.54
SHMT2-218ENST00000555213 PCSK1P29120 753 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 TSPY1Q01534 308 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 HYAL1Q12794 435 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 CCDC85BQ15834 202 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-218ENST00000555213 FKBP15Q5T1M5 1219 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 KLHDC7AQ5VTJ3 777 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 SLC8B1Q6J4K2 584 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 SCARA5Q6ZMJ2 495 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 EP400NLQ6ZTU2 488 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 ADGRD2Q7Z7M1 963 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 TTC39CQ8N584 583 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 EFHBQ8N7U6 833 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 EHBP1Q8NDI1 1231 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 KIAA1524Q8TCG1 905 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 PPM1EQ8WY54 764 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 CASP10Q92851 521 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 SEMA4DQ92854 862 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 FAXDC2Q96IV6 333 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 PANX2Q96RD6 677 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 DNAJC7Q99615 494 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 NUP58Q9BVL2 599 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 NAA15Q9BXJ9 866 aaKnown RBP11.66□□□□□ -0.54
SHMT2-218ENST00000555213 EDEM3Q9BZQ6 932 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 IGFLR1Q9H665 355 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 PLCB1Q9NQ66 1216 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 DZANK1Q9NVP4 752 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 GCNT4Q9P109 453 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 FBXL5Q9UKA1 691 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 AJAP1Q9UKB5 411 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-218ENST00000555213 L1RE1Q9UN81 338 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 COQ4Q9Y3A0 265 aa11.66□□□□□ -0.54
SHMT2-218ENST00000555213 PER2O15055 1255 aa11.65□□□□□ -0.54
SHMT2-218ENST00000555213 TACC1O75410 805 aa11.65□□□□□ -0.54
SHMT2-218ENST00000555213 FAM163BP0C2L3 166 aa11.65□□□□□ -0.54
SHMT2-218ENST00000555213 TBXAS1P24557 533 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-218ENST00000555213 HNRNPH3P31942 346 aaKnown RBP11.65□□□□□ -0.54
SHMT2-218ENST00000555213 OR1D2P34982 312 aa11.65□□□□□ -0.54
SHMT2-218ENST00000555213 KRT9P35527 623 aa11.65□□□□□ -0.54
SHMT2-218ENST00000555213 ARPP19P56211 112 aa11.65□□□□□ -0.54
SHMT2-218ENST00000555213 YWHAEP62258 255 aaKnown RBP11.65□□□□□ -0.54
SHMT2-218ENST00000555213 MRPL58Q14197 206 aaKnown RBP11.65□□□□□ -0.54
SHMT2-218ENST00000555213 SOWAHAQ2M3V2 549 aa11.65□□□□□ -0.54
SHMT2-218ENST00000555213 LIN9Q5TKA1 542 aa11.65□□□□□ -0.54
SHMT2-218ENST00000555213 E4F1Q66K89 784 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-218ENST00000555213 LLGL2Q6P1M3 1020 aa11.65□□□□□ -0.54
SHMT2-218ENST00000555213 GBP6Q6ZN66 633 aa11.65□□□□□ -0.54
SHMT2-218ENST00000555213 GLYCTKQ8IVS8 523 aa11.65□□□□□ -0.54
SHMT2-218ENST00000555213 DCP1BQ8IZD4 617 aaKnown RBP11.65□□□□□ -0.54
SHMT2-218ENST00000555213 PABPC5Q96DU9 382 aaKnown RBP11.65□□□□□ -0.54
SHMT2-218ENST00000555213 TRIM44Q96DX7 344 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-218ENST00000555213 NT5C1BQ96P26 610 aa11.65□□□□□ -0.54
SHMT2-218ENST00000555213 CLSTN3Q9BQT9 956 aa11.65□□□□□ -0.54
SHMT2-218ENST00000555213 PI4K2AQ9BTU6 479 aa11.65□□□□□ -0.54
SHMT2-218ENST00000555213 COL25A1Q9BXS0 654 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-218ENST00000555213 FAM124BQ9H5Z6 455 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-218ENST00000555213 SMYD3Q9H7B4 428 aa11.65□□□□□ -0.54
SHMT2-218ENST00000555213 CYP3A43Q9HB55 503 aa11.65□□□□□ -0.54
SHMT2-218ENST00000555213 FAM207AQ9NSI2 230 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-218ENST00000555213 DDX43Q9NXZ2 648 aaKnown RBP11.65□□□□□ -0.54
SHMT2-218ENST00000555213 CLDND1Q9NY35 253 aa11.65□□□□□ -0.54
SHMT2-218ENST00000555213 HCFC2Q9Y5Z7 792 aa11.65□□□□□ -0.54
SHMT2-218ENST00000555213 PRRC2BQ5JSZ5 2229 aaKnown RBP11.65□□□□□ -0.54
SHMT2-218ENST00000555213 SKILP12757 684 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 WARSP23381 471 aaKnown RBP11.64□□□□□ -0.55
SHMT2-218ENST00000555213 ELF1P32519 619 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 ASPAP45381 313 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 CLCN4P51793 760 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 ZBED6P86452 979 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 ROR1Q01973 937 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 SMARCB1Q12824 385 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 RAB33AQ14088 237 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 TRIM14Q14142 442 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 MAPRE1Q15691 268 aaKnown RBP11.64□□□□□ -0.55
SHMT2-218ENST00000555213 EXOC3L4Q17RC7 722 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 TPGS2Q68CL5 300 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 PHLDB3Q6NSJ2 640 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 GJB7Q6PEY0 223 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 CCDC149Q6ZUS6 474 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 ZSCAN30Q86W11 494 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 PALB2Q86YC2 1186 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 OR8K1Q8NGG5 319 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 OR6B3Q8NGW1 331 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 FAM81BQ96LP2 452 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 CHP1Q99653 195 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 ACBD6Q9BR61 282 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 LSM14BQ9BX40 385 aaKnown RBP11.64□□□□□ -0.55
SHMT2-218ENST00000555213 INTS2Q9H0H0 1204 aaKnown RBP11.64□□□□□ -0.55
SHMT2-218ENST00000555213 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.64□□□□□ -0.551e-9■■■■■ 76.9
SHMT2-218ENST00000555213 ABHD10Q9NUJ1 306 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 MAFFQ9ULX9 164 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 POLIQ9UNA4 740 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms