RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 GPR153Q6NV75 609 aa10.88□□□□□ -0.67
SYNE2-215ENST00000554997 FAM171BQ6P995 826 aa10.88□□□□□ -0.67
SYNE2-215ENST00000554997 TMEM270Q6UE05 265 aa10.88□□□□□ -0.67
SYNE2-215ENST00000554997 SCARA5Q6ZMJ2 495 aa10.88□□□□□ -0.67
SYNE2-215ENST00000554997 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.88□□□□□ -0.67
SYNE2-215ENST00000554997 PPFIBP1Q86W92 1011 aa10.88□□□□□ -0.67
SYNE2-215ENST00000554997 OSTM1Q86WC4 334 aa10.88□□□□□ -0.67
SYNE2-215ENST00000554997 FAM71AQ8IYT1 594 aa10.88□□□□□ -0.67
SYNE2-215ENST00000554997 ZNF397Q8NF99 534 aaPredicted RBP10.88□□□□□ -0.67
SYNE2-215ENST00000554997 CPLX3Q8WVH0 158 aa10.88□□□□□ -0.67
SYNE2-215ENST00000554997 TNIP3Q96KP6 325 aa10.88□□□□□ -0.67
SYNE2-215ENST00000554997 TCF25Q9BQ70 676 aa10.88□□□□□ -0.67
SYNE2-215ENST00000554997 CLSTN3Q9BQT9 956 aa10.88□□□□□ -0.67
SYNE2-215ENST00000554997 NT5C1AQ9BXI3 368 aa10.88□□□□□ -0.67
SYNE2-215ENST00000554997 GPR88Q9GZN0 384 aa10.88□□□□□ -0.67
SYNE2-215ENST00000554997 ZCWPW1Q9H0M4 648 aa10.88□□□□□ -0.67
SYNE2-215ENST00000554997 NUCKS1Q9H1E3 243 aaKnown RBP10.88□□□□□ -0.67
SYNE2-215ENST00000554997 NLRC4Q9NPP4 1024 aa10.88□□□□□ -0.67
SYNE2-215ENST00000554997 LMCD1Q9NZU5 365 aa10.88□□□□□ -0.67
SYNE2-215ENST00000554997 MTRRQ9UBK8 725 aa10.88□□□□□ -0.67
SYNE2-215ENST00000554997 AJAP1Q9UKB5 411 aaPredicted RBP10.88□□□□□ -0.67
SYNE2-215ENST00000554997 LUC7L2Q9Y383 392 aaKnown RBP10.88□□□□□ -0.67
SYNE2-215ENST00000554997 TRIP11Q15643 1979 aa10.88□□□□□ -0.67
SYNE2-215ENST00000554997 TDRD15B5MCY1 1934 aaKnown RBP10.88□□□□□ -0.67
SYNE2-215ENST00000554997 SZT2Q5T011 3432 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 PDCD11Q14690 1871 aaKnown RBP10.87□□□□□ -0.67
SYNE2-215ENST00000554997 C2orf71A6NGG8 1288 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 EPOPA6NHQ4 379 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 C2CD2LO14523 706 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 LPXNO60711 386 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 C1RP00736 705 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 GYPCP04921 128 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 PAEPP09466 180 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 CASP14P31944 242 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 OR1D2P34982 312 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 BPIFB4P59827 614 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 ZBED6P86452 979 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 SMARCB1Q12824 385 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 RAPGEF1Q13905 1077 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 TRIM14Q14142 442 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 PTPN14Q15678 1187 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 MAPRE1Q15691 268 aaKnown RBP10.87□□□□□ -0.67
SYNE2-215ENST00000554997 PSMD5Q16401 504 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 PTPROQ16827 1216 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 ZNF280DQ6N043 979 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 PRSS55Q6UWB4 352 aaPredicted RBP10.87□□□□□ -0.67
SYNE2-215ENST00000554997 RSPO2Q6UXX9 243 aaPredicted RBP10.87□□□□□ -0.67
SYNE2-215ENST00000554997 LRRTM3Q86VH5 581 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 FMNL3Q8IVF7 1028 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 DCP1BQ8IZD4 617 aaKnown RBP10.87□□□□□ -0.67
SYNE2-215ENST00000554997 SLC4A11Q8NBS3 891 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 ZNF461Q8TAF7 563 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 BAP1Q92560 729 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 SYN2Q92777 582 aaPredicted RBP10.87□□□□□ -0.67
SYNE2-215ENST00000554997 HEXIM2Q96MH2 286 aaKnown RBP10.87□□□□□ -0.67
SYNE2-215ENST00000554997 KLHL5Q96PQ7 755 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 SPAG5Q96R06 1193 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 TWNKQ96RR1 684 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 EMILIN2Q9BXX0 1053 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 ELOVL4Q9GZR5 314 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 TTYH1Q9H313 450 aaPredicted RBP10.87□□□□□ -0.67
SYNE2-215ENST00000554997 ENTPD7Q9NQZ7 604 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 AIPL1Q9NZN9 384 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 NME7Q9Y5B8 376 aa10.87□□□□□ -0.67
SYNE2-215ENST00000554997 HIDE1A8MVS5 230 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 F8VZ95 297 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 RFXAPO00287 272 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 TEX28O15482 410 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 HCRTO43612 131 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 ATP2C2O75185 946 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 ABLIM3O94929 683 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 TPM1P09493 284 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 CNPP09543 421 aaKnown RBP10.86□□□□□ -0.67
SYNE2-215ENST00000554997 CCDC172P0C7W6 258 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 KRT5P13647 590 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 POU3F3P20264 500 aaPredicted RBP10.86□□□□□ -0.67
SYNE2-215ENST00000554997 ACAT1P24752 427 aaKnown RBP10.86□□□□□ -0.67
SYNE2-215ENST00000554997 CLCN1P35523 988 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 IRS1P35568 1242 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 SOX5P35711 763 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 USP8P40818 1118 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 NDUFV1P49821 464 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 FXR1P51114 621 aaKnown RBP eCLIP10.86□□□□□ -0.67
SYNE2-215ENST00000554997 ZNF132P52740 706 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 PTK2Q05397 1052 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 GPR17Q13304 367 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 RAB33AQ14088 237 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 ARID5BQ14865 1188 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 GRIN2CQ14957 1233 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 ZNF394Q53GI3 561 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 INTS6LQ5JSJ4 861 aaKnown RBP10.86□□□□□ -0.67
SYNE2-215ENST00000554997 TMC6Q7Z403 805 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 ACOT1Q86TX2 421 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 DRC7Q8IY82 874 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 RBBP8NLQ8NC74 664 aaPredicted RBP10.86□□□□□ -0.67
SYNE2-215ENST00000554997 B3GALNT2Q8NCR0 500 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 OR10T2Q8NGX3 314 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 MYCBPAPQ8TBZ2 947 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 AUTS2Q8WXX7 1259 aa10.86□□□□□ -0.67
SYNE2-215ENST00000554997 MRPL38Q96DV4 380 aaKnown RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms