RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 GPR152Q8TDT2 470 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 NOC3LQ8WTT2 800 aaKnown RBP17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 ING5Q8WYH8 240 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 CCDC47Q96A33 483 aaKnown RBP17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 TCEAL4Q96EI5 215 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 CCDC34Q96HJ3 373 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 HPDLQ96IR7 371 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 FNBP1Q96RU3 617 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 RPP25Q9BUL9 199 aaKnown RBP17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 MFSD1Q9H3U5 465 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 GOLPH3LQ9H4A5 285 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 ARHGEF3Q9NR81 526 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 TRAF3IP3Q9Y228 551 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 R3HCC1Q9Y3T6 440 aaKnown RBP17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 SNX9Q9Y5X1 595 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 CACNA1HO95180 2353 aa17.24■□□□□ 0.35
CCDC88C-209ENST00000554872 MAPK13O15264 365 aa17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 GALR2O43603 387 aaPredicted RBP17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 CFHP08603 1231 aa17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 KRT19P08727 400 aa17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 HAPLN1P10915 354 aaPredicted RBP17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 PCSK1P29120 753 aa17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 WEE1P30291 646 aa17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 MYL7Q01449 175 aa17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 NHLH1Q02575 133 aa17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 ENPEPQ07075 957 aa17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 VEPH1Q14D04 833 aa17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 SOWAHAQ2M3V2 549 aa17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 CFAP221Q4G0U5 840 aa17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 INTS6LQ5JSJ4 861 aaKnown RBP17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 ADGRF2Q8IZF7 708 aa17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 HS6ST3Q8IZP7 471 aa17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 TTC9BQ8N6N2 239 aa17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 SMARCD2Q92925 531 aa17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 FUBP3Q96I24 572 aaKnown RBP eCLIP17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 VRTNQ9H8Y1 702 aa17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 DDX43Q9NXZ2 648 aaKnown RBP17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 ZMYM5Q9UJ78 669 aa17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 PCDHB5Q9Y5E4 795 aa17.23■□□□□ 0.35
CCDC88C-209ENST00000554872 EXOC3O60645 756 aa17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 ZNF202O95125 648 aa17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 DLATP10515 647 aaKnown RBP17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 ATF6P18850 670 aa17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 ATICP31939 592 aa17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 STARD6P59095 220 aa17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 TCF15Q12870 199 aa17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 FAM78AQ5JUQ0 283 aa17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 LMBRD2Q68DH5 695 aaPredicted RBP17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 SCARA3Q6AZY7 606 aa17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 DNAJB7Q7Z6W7 309 aaPredicted RBP17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 SHKBP1Q8TBC3 707 aa17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 PARD3BQ8TEW8 1205 aa17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 DNASE1L2Q92874 299 aa17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 E2F7Q96AV8 911 aa17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 MCRS1Q96EZ8 462 aa17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 SHDQ96IW2 340 aa17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 FAM84AQ96KN4 292 aa17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 CEP295NLQ96MC4 621 aa17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 DDX23Q9BUQ8 820 aaKnown RBP17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 ZFP14Q9HCL3 533 aa17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 TRPV5Q9NQA5 729 aa17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 SLC27A5Q9Y2P5 690 aa17.22■□□□□ 0.35
CCDC88C-209ENST00000554872 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.21■□□□□ 0.35
CCDC88C-209ENST00000554872 SOBPA7XYQ1 873 aa17.21■□□□□ 0.35
CCDC88C-209ENST00000554872 NRG2O14511 850 aaPredicted RBP17.21■□□□□ 0.35
CCDC88C-209ENST00000554872 TACC1O75410 805 aa17.21■□□□□ 0.35
CCDC88C-209ENST00000554872 MYL4P12829 197 aa17.21■□□□□ 0.35
CCDC88C-209ENST00000554872 TNNI1P19237 187 aa17.21■□□□□ 0.35
CCDC88C-209ENST00000554872 WARSP23381 471 aaKnown RBP17.21■□□□□ 0.35
CCDC88C-209ENST00000554872 MCCD1P59942 119 aaPredicted RBP17.21■□□□□ 0.35
CCDC88C-209ENST00000554872 GPC5P78333 572 aa17.21■□□□□ 0.35
CCDC88C-209ENST00000554872 PRKCQQ04759 706 aa17.21■□□□□ 0.35
CCDC88C-209ENST00000554872 FAM171BQ6P995 826 aa17.21■□□□□ 0.35
CCDC88C-209ENST00000554872 FMR1NBQ8N0W7 255 aaPredicted RBP17.21■□□□□ 0.35
CCDC88C-209ENST00000554872 GUF1Q8N442 669 aaKnown RBP17.21■□□□□ 0.35
CCDC88C-209ENST00000554872 TMC2Q8TDI7 906 aa17.21■□□□□ 0.35
CCDC88C-209ENST00000554872 DEPDC1BQ8WUY9 529 aa17.21■□□□□ 0.35
CCDC88C-209ENST00000554872 KBTBD7Q8WVZ9 684 aa17.21■□□□□ 0.35
CCDC88C-209ENST00000554872 KXD1Q9BQD3 176 aa17.21■□□□□ 0.35
CCDC88C-209ENST00000554872 XYLT2Q9H1B5 865 aa17.21■□□□□ 0.35
CCDC88C-209ENST00000554872 NR3C1P04150 777 aa17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 PRR29P0C7W0 189 aa17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 CDC25CP30307 473 aa17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 HOXD11P31277 338 aaPredicted RBP17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 MAGEA11P43364 429 aa17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 MAPRE1Q15691 268 aaKnown RBP17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 MGAT5BQ3V5L5 792 aa17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 TANGO2Q6ICL3 276 aa17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 GAREM2Q75VX8 874 aa17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 OSTM1Q86WC4 334 aa17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 RDH13Q8NBN7 331 aa17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 PLEKHO2Q8TD55 490 aa17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 ZNF516Q92618 1163 aa17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 SYAP1Q96A49 352 aaPredicted RBP17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 CCDC127Q96BQ5 260 aa17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 ZSWIM3Q96MP5 696 aa17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 SEPT5Q99719 369 aaPredicted RBP17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 MKNK1Q9BUB5 465 aa17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 OSBPL6Q9BZF3 934 aa17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 TBC1D17Q9HA65 648 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms