RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 PLIN1O60240 522 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 MAP4K4O95819 1239 aaPredicted RBP1.91□□□□□ -2.1
PRPF39-208ENST00000554785 LMNAP02545 664 aaKnown RBP1.91□□□□□ -2.1
PRPF39-208ENST00000554785 HRGP04196 525 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 TRIM27P14373 513 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 TYRP1P17643 537 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 MALP21145 153 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 SLC6A2P23975 617 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 SMARCA1P28370 1054 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 PCSK1P29120 753 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 FLT3LGP49771 235 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 USP14P54578 494 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 ZNF280AP59817 542 aaPredicted RBP1.91□□□□□ -2.1
PRPF39-208ENST00000554785 CTXN1P60606 82 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 ATP8B2P98198 1209 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 TLE1Q04724 770 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 SNAPC2Q13487 334 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 GALEQ14376 348 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 ANO6Q4KMQ2 910 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 HECTD2Q5U5R9 776 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 AGAP9Q5VTM2 703 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 AFMIDQ63HM1 303 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 PPP4R4Q6NUP7 873 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 EFCAB12Q6NXP0 572 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 SYCE2Q6PIF2 218 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 NPNTQ6UXI9 565 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 HEATR3Q7Z4Q2 680 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 DAAM2Q86T65 1068 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 KIAA0319LQ8IZA0 1049 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 FAM43AQ8N2R8 423 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 KLHDC4Q8TBB5 520 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 ASB10Q8WXI3 467 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 DCLRE1CQ96SD1 692 aaKnown RBP1.91□□□□□ -2.1
PRPF39-208ENST00000554785 ZSWIM1Q9BR11 485 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 LRFN3Q9BTN0 628 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 SARGQ9BW04 601 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 B3GNT5Q9BYG0 378 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 TOR3AQ9H497 397 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 LMBRD1Q9NUN5 540 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 SLC52A1Q9NWF4 448 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 RUVBL1Q9Y265 456 aaKnown RBP1.91□□□□□ -2.1
PRPF39-208ENST00000554785 ACTL7AQ9Y615 435 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 CDC42BPAQ5VT25 1732 aa1.91□□□□□ -2.1
PRPF39-208ENST00000554785 PLA2R1Q13018 1463 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 AATKQ6ZMQ8 1374 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 A0A088AWK7 358 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 CAPN8A6NHC0 703 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 H3BUI4 141 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 TPP1O14773 563 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 NUDT3O95989 172 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 ZBED1O96006 694 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 RAP2AP10114 183 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 TYRP14679 529 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 RHCEP18577 417 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 CD38P28907 300 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 ALDH1A3P47895 512 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 AGFG1P52594 562 aaKnown RBP1.9□□□□□ -2.1
PRPF39-208ENST00000554785 RAP2BP61225 183 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 NKX6-1P78426 367 aaPredicted RBP1.9□□□□□ -2.1
PRPF39-208ENST00000554785 GPSM2P81274 684 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 RHDQ02161 417 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 CREMQ03060 361 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 RESTQ13127 1097 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 FGL2Q14314 439 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 ATP2B3Q16720 1220 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 COBLL1Q53SF7 1204 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 ATXN7L2Q5T6C5 722 aaPredicted RBP1.9□□□□□ -2.1
PRPF39-208ENST00000554785 TSHZ3Q63HK5 1081 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 B3GNTL1Q67FW5 361 aaPredicted RBP1.9□□□□□ -2.1
PRPF39-208ENST00000554785 OTUD7BQ6GQQ9 843 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 CCDC149Q6ZUS6 474 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 MED25Q71SY5 747 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 BHLHA9Q7RTU4 235 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 PRIMA1Q86XR5 153 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 SH2D3CQ8N5H7 860 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 FAM156AQ8NDB6 213 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 OR56A1Q8NGH5 318 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 PLBD2Q8NHP8 589 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 MTFMTQ96DP5 389 aaKnown RBP1.9□□□□□ -2.1
PRPF39-208ENST00000554785 SLC35A4Q96G79 324 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 FAM167AQ96KS9 214 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 BBC3Q96PG8 261 aaPredicted RBP1.9□□□□□ -2.1
PRPF39-208ENST00000554785 MRI1Q9BV20 369 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 C11orf54Q9H0W9 315 aaPredicted RBP1.9□□□□□ -2.1
PRPF39-208ENST00000554785 R3HDMLQ9H3Y0 253 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 ARMT1Q9H993 441 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 DDX21Q9NR30 783 aaKnown RBP eCLIP1.9□□□□□ -2.12e-13■□□□□ 9.6
PRPF39-208ENST00000554785 KLHL11Q9NVR0 708 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 PNPOQ9NVS9 261 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 ABCF2Q9UG63 623 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 L1RE1Q9UN81 338 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 PREX2Q70Z35 1606 aa1.9□□□□□ -2.1
PRPF39-208ENST00000554785 NPHP4O75161 1426 aaPredicted RBP1.9□□□□□ -2.11
PRPF39-208ENST00000554785 ZC3H13Q5T200 1668 aaKnown RBP1.9□□□□□ -2.11
PRPF39-208ENST00000554785 CAMTA1Q9Y6Y1 1673 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 CEP152O94986 1710 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 GAGE12BA1L429 117 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 CFAP69A5D8W1 941 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 GAGE12HA6NDE8 117 aa1.9□□□□□ -2.11
PRPF39-208ENST00000554785 PJA2O43164 708 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms