RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 LRRIQ3A6PVS8 624 aaPredicted RBP11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 HCRTO43612 131 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 NR3C1P04150 777 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 HAPLN1P10915 354 aaPredicted RBP11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 MYL4P12829 197 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 GJA1P17302 382 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 NPR3P17342 541 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 ATF6P18850 670 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 FCARP24071 287 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 ACAT1P24752 427 aaKnown RBP11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 AVPR2P30518 371 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 ALDH1A3P47895 512 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 LHX1P48742 406 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 TUFMP49411 452 aaKnown RBP11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 EPHB3P54753 998 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 FAM160A1Q05DH4 1040 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 MYO1EQ12965 1108 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 PNOCQ13519 176 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 NFIL3Q16649 462 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 CCDC142Q17RM4 750 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 INTS6LQ5JSJ4 861 aaKnown RBP11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 IER5LQ5T953 404 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 CYP4A22Q5TCH4 519 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 MTSS1LQ765P7 747 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 PDZD4Q76G19 769 aaPredicted RBP11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 DPH6Q7L8W6 267 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 DNAJB7Q7Z6W7 309 aaPredicted RBP11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 DCP1BQ8IZD4 617 aaKnown RBP11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 ADGRF2Q8IZF7 708 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 GUF1Q8N442 669 aaKnown RBP11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 SHKBP1Q8TBC3 707 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 SPPL2BQ8TCT7 592 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 PSMG2Q969U7 264 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 CCDC47Q96A33 483 aaKnown RBP11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 ZSWIM3Q96MP5 696 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 PLA2G2FQ9BZM2 168 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 XYLT2Q9H1B5 865 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 ZNF334Q9HCZ1 680 aaPredicted RBP11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 ASAH2Q9NR71 780 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 SLC2A4RGQ9NR83 387 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 WNT16Q9UBV4 365 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 CIZ1Q9ULV3 898 aaPredicted RBP11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 MAPK8IP1Q9UQF2 711 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 ASB3Q9Y575 518 aa11.03□□□□□ -0.64
CCDC88C-206ENST00000553437 ANK1P16157 1881 aa11.02□□□□□ -0.64
CCDC88C-206ENST00000553437 KRBA1A5PL33 1030 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 GOLGA6L4A6NEF3 574 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 ECI2O75521 394 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 STAU1O95793 577 aaKnown RBP11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 C4BPAP04003 597 aaKnown RBP11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 CFHP08603 1231 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 FAM163BP0C2L3 166 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 WARSP23381 471 aaKnown RBP11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 LMO2P25791 158 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 MRE11P49959 708 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 MYL6P60660 151 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 GPC5P78333 572 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 DLG4P78352 724 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 MYL7Q01449 175 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 TSPY1Q01534 308 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 TEAD2Q15562 447 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 NFE2Q16621 373 aaPredicted RBP11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 MGAT5BQ3V5L5 792 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 ZCWPW2Q504Y3 356 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 FAM78AQ5JUQ0 283 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 C1orf220Q5T0J3 134 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 TDRD10Q5VZ19 366 aaKnown RBP11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 CWF19L1Q69YN2 538 aaKnown RBP11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 TANGO2Q6ICL3 276 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 FAM171BQ6P995 826 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 GAREM2Q75VX8 874 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 SUGP1Q8IWZ8 645 aaKnown RBP11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 SIX5Q8N196 739 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 SPATA20Q8TB22 786 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 TMC2Q8TDI7 906 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 GPR152Q8TDT2 470 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 TIGD1Q96MW7 591 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 ASB16Q96NS5 453 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 SEPT5Q99719 369 aaPredicted RBP11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 KXD1Q9BQD3 176 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 LPIN3Q9BQK8 851 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 MRPL45Q9BRJ2 306 aaKnown RBP11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 KCNH6Q9H252 994 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 IL21Q9HBE4 155 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 GTF3C4Q9UKN8 822 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 R3HCC1Q9Y3T6 440 aaKnown RBP11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 NME7Q9Y5B8 376 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 PCDHB5Q9Y5E4 795 aa11.02□□□□□ -0.65
CCDC88C-206ENST00000553437 SCN1AP35498 2009 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 NOTCH4Q99466 2003 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 A0A1W2PRU2 124 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 MYBPHLA2RUH7 354 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 MAPK13O15264 365 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 CALUO43852 315 aaPredicted RBP11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 ATP2C2O75185 946 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 TACC1O75410 805 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 AKAP3O75969 853 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 KIF20AO95235 890 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 VNN1O95497 513 aa11.01□□□□□ -0.65
CCDC88C-206ENST00000553437 PCSK1P29120 753 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms