RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 GPD1LQ8N335 351 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 CSGALNACT2Q8N6G5 542 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 TTC9BQ8N6N2 239 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 LRRC52Q8N7C0 313 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 IQUBQ8NA54 791 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 LINC00301Q8NCQ3 95 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 RUBCNQ92622 972 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 ANKRD36BP1Q96IX9 119 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 LPIN3Q9BQK8 851 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 FAM126AQ9BYI3 521 aaPredicted RBP13.73□□□□□ -0.21
LINC00643-202ENST00000553426 IKZF4Q9H2S9 585 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 C8orf33Q9H7E9 229 aaPredicted RBP13.73□□□□□ -0.21
LINC00643-202ENST00000553426 THG1LQ9NWX6 298 aaKnown RBP13.73□□□□□ -0.21
LINC00643-202ENST00000553426 ZSCAN32Q9NX65 697 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 OBP2AQ9NY56 170 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 ABI2Q9NYB9 513 aaPredicted RBP13.73□□□□□ -0.21
LINC00643-202ENST00000553426 ITGA11Q9UKX5 1188 aa13.73□□□□□ -0.21
LINC00643-202ENST00000553426 CACNA1IQ9P0X4 2223 aa13.72□□□□□ -0.21
LINC00643-202ENST00000553426 A0A087X0B3 334 aa13.72□□□□□ -0.21
LINC00643-202ENST00000553426 GOLGA8IPA6NC78 632 aa13.72□□□□□ -0.21
LINC00643-202ENST00000553426 GOLGA8JA6NMD2 632 aa13.72□□□□□ -0.21
LINC00643-202ENST00000553426 NRG2O14511 850 aaPredicted RBP13.72□□□□□ -0.21
LINC00643-202ENST00000553426 HAPLN1P10915 354 aaPredicted RBP13.72□□□□□ -0.21
LINC00643-202ENST00000553426 ID4P47928 161 aa13.72□□□□□ -0.21
LINC00643-202ENST00000553426 CASP5P51878 434 aa13.72□□□□□ -0.21
LINC00643-202ENST00000553426 NRLP54845 237 aa13.72□□□□□ -0.21
LINC00643-202ENST00000553426 PLCB2Q00722 1185 aa13.72□□□□□ -0.21
LINC00643-202ENST00000553426 BFSP1Q12934 665 aa13.72□□□□□ -0.21
LINC00643-202ENST00000553426 MYO1EQ12965 1108 aa13.72□□□□□ -0.21
LINC00643-202ENST00000553426 LRRC32Q14392 662 aa13.72□□□□□ -0.21
LINC00643-202ENST00000553426 STXBP5Q5T5C0 1151 aa13.72□□□□□ -0.21
LINC00643-202ENST00000553426 HSCBQ8IWL3 235 aa13.72□□□□□ -0.21
LINC00643-202ENST00000553426 MAML2Q8IZL2 1156 aaPredicted RBP13.72□□□□□ -0.21
LINC00643-202ENST00000553426 SPATA18Q8TC71 538 aa13.72□□□□□ -0.21
LINC00643-202ENST00000553426 GIPC2Q8TF65 315 aa13.72□□□□□ -0.21
LINC00643-202ENST00000553426 SECISBP2LQ93073 1101 aaKnown RBP13.72□□□□□ -0.21
LINC00643-202ENST00000553426 CBWD1Q9BRT8 395 aa13.72□□□□□ -0.21
LINC00643-202ENST00000553426 CHRDQ9H2X0 955 aa13.72□□□□□ -0.21
LINC00643-202ENST00000553426 PCIF1Q9H4Z3 704 aa13.72□□□□□ -0.21
LINC00643-202ENST00000553426 TASP1Q9H6P5 420 aa13.72□□□□□ -0.21
LINC00643-202ENST00000553426 LMAN1LQ9HAT1 526 aa13.72□□□□□ -0.21
LINC00643-202ENST00000553426 DMXL1Q9Y485 3027 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 ZNF233A6NK53 670 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 CUTAO60888 179 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 PRPF40AO75400 957 aaKnown RBP13.71□□□□□ -0.21
LINC00643-202ENST00000553426 YEATS4O95619 227 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 TNNC2P02585 160 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 ATF6P18850 670 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 CCNE1P24864 410 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 PCSK1P29120 753 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 WEE1P30291 646 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 AVPR1AP37288 418 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 LHX1P48742 406 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 RPL10AP62906 217 aaKnown RBP13.71□□□□□ -0.21
LINC00643-202ENST00000553426 ASIC1P78348 528 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 MTAPQ13126 283 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 ERMP1Q7Z2K6 904 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 LRRTM3Q86VH5 581 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 PDCL2Q8N4E4 241 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 C1orf127Q8N9H9 656 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 SNX21Q969T3 373 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 DHX58Q96C10 678 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 ACBD6Q9BR61 282 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 MAGEF1Q9HAY2 307 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 KIAA1586Q9HCI6 787 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 PDE11AQ9HCR9 933 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 KBTBD4Q9NVX7 518 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 DDX43Q9NXZ2 648 aaKnown RBP13.71□□□□□ -0.21
LINC00643-202ENST00000553426 TFIP11Q9UBB9 837 aaKnown RBP13.71□□□□□ -0.21
LINC00643-202ENST00000553426 SNX9Q9Y5X1 595 aa13.71□□□□□ -0.21
LINC00643-202ENST00000553426 SCN1AP35498 2009 aa13.71□□□□□ -0.22
LINC00643-202ENST00000553426 GVINP1Q7Z2Y8 2422 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 EIF3DO15371 548 aaKnown RBP eCLIP13.7□□□□□ -0.22
LINC00643-202ENST00000553426 CSH1P0DML2 217 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 CSH2P0DML3 217 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 DDX6P26196 483 aaKnown RBP eCLIP13.7□□□□□ -0.22
LINC00643-202ENST00000553426 CCR3P51677 355 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 CDR1P51861 262 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 CYP4F8P98187 520 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 FZD5Q13467 585 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 MAMSTRQ6ZN01 415 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 RALGPS2Q86X27 583 aaPredicted RBP13.7□□□□□ -0.22
LINC00643-202ENST00000553426 GPIHBP1Q8IV16 184 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 CMTM8Q8IZV2 173 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 TOP6BLQ8N6T0 577 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 CELF5Q8N6W0 485 aaKnown RBP13.7□□□□□ -0.22
LINC00643-202ENST00000553426 ZSWIM2Q8NEG5 633 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 BPIFB1Q8TDL5 484 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 MRPS31Q92665 395 aaKnown RBP13.7□□□□□ -0.22
LINC00643-202ENST00000553426 RSPRY1Q96DX4 576 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 PI4K2AQ9BTU6 479 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 TRIM9Q9C026 710 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 MTMR12Q9C0I1 747 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 ABCB6Q9NP58 842 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 PRMT8Q9NR22 394 aaPredicted RBP13.7□□□□□ -0.22
LINC00643-202ENST00000553426 GDAP2Q9NXN4 497 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 FAM13BQ9NYF5 915 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 NCDNQ9UBB6 729 aa13.7□□□□□ -0.22
LINC00643-202ENST00000553426 UXTQ9UBK9 157 aaPredicted RBP13.7□□□□□ -0.22
LINC00643-202ENST00000553426 L1RE1Q9UN81 338 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms